Evidence map›Paper›PMID 32163283›Full record

ArticleThe journal of physical chemistry. A2020

Modeling Dynamic Conformations of Organic Molecules: Alkyne Carotenoids in Solution.

Simona Streckaite, Mindaugas Macernis, Fei Li, Eliška Kuthanová Trsková, Radek Litvin, Chunhong Yang, Andrew A Pascal, Leonas Valkunas, Bruno Robert, Manuel J Llansola-Portoles

Abstract read
In one paragraph

Article in The journal of physical chemistry. A, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Electronic and Vibrational Properties of Allene Carotenoids.The journal of physical chemistry. A · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Simona StreckaiteUniversité Paris-Saclay, CEA, CNRS, Institute for Integrative Biology of the Cell (I2BC), 91198 Gif-sur-Yvette, France.ORCID http://orcid.org/0000-0003-0541-5806
Mindaugas MacernisInstitute of Chemical Physics, Faculty of Physics, Vilnius University, Saulėtekio Ave. 3, LT-10222 Vilnius, Lithuania.
Fei LiUniversité Paris-Saclay, CEA, CNRS, Institute for Integrative Biology of the Cell (I2BC), 91198 Gif-sur-Yvette, France.
Eliška Kuthanová TrskováFaculty of Science, University of South Bohemia, Branisovska 1760, 370 05 Ceske Budejovice, Czech Republic.
Radek LitvinBiology Centre, Czech Academy of Sciences, Branisovska 31, 370 05 Ceske Budejovice, Czech Republic.
Chunhong YangKey Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, 100093 Beijing, People's Republic of China.
Andrew A PascalUniversité Paris-Saclay, CEA, CNRS, Institute for Integrative Biology of the Cell (I2BC), 91198 Gif-sur-Yvette, France.
Leonas ValkunasInstitute of Chemical Physics, Faculty of Physics, Vilnius University, Saulėtekio Ave. 3, LT-10222 Vilnius, Lithuania.ORCID http://orcid.org/0000-0002-1356-8477
Bruno RobertUniversité Paris-Saclay, CEA, CNRS, Institute for Integrative Biology of the Cell (I2BC), 91198 Gif-sur-Yvette, France.
Manuel J Llansola-PortolesUniversité Paris-Saclay, CEA, CNRS, Institute for Integrative Biology of the Cell (I2BC), 91198 Gif-sur-Yvette, France.ORCID http://orcid.org/0000-0002-8065-9459

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Calculating the spectroscopic properties of complex conjugated organic molecules in their relaxed state is far from simple. An additional complexity arises for flexible molecules in solution, where the rotational energy barriers are low enough so that nonminimum conformations may become dynamically populated. These metastable conformations quickly relax during the minimization procedures preliminary to density functional theory calculations, and so accounting for their contribution to the experimentally observed properties is problematic. We describe a strategy for stabilizing these nonminimum conformations

Identifiers

PMID32163283
PMCPMC7313542

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.