Evidence map›Paper›PMID 32163032›Full record

ArticleeLife2020

Adaptation of hydroxymethylbutenyl diphosphate reductase enables volatile isoprenoid production.

Mareike Bongers, Jordi Perez-Gil, Mark P Hodson, Lars Schrübbers, Tune Wulff, Morten Oa Sommer, Lars K Nielsen, Claudia E Vickers

Open access · goldAbstract read
In one paragraph

Article in eLife, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 34 citations in OpenAlex.

  1. Review
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  9. Article
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  11. Engineered production of isoprene from the model green microalgaMetabolic engineering communications · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 3 countries.

Mareike BongersNovo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Lyngby, Denmark.ORCID 0000-0003-4739-3852
Jordi Perez-GilAustralian Institute for Bioengineering and Nanotechnology, The University of Queensland, Brisbane, Australia.ORCID 0000-0002-5632-9556
Mark P HodsonAustralian Institute for Bioengineering and Nanotechnology, The University of Queensland, Brisbane, Australia.ORCID 0000-0002-5436-1886
Lars SchrübbersNovo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Lyngby, Denmark.
Tune WulffNovo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Lyngby, Denmark.ORCID 0000-0002-8822-1048
Morten Oa SommerNovo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Lyngby, Denmark.
Lars K Nielsen *Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Lyngby, Denmark.ORCID 0000-0001-8191-3511
Claudia E Vickers *Australian Institute for Bioengineering and Nanotechnology, The University of Queensland, Brisbane, Australia.ORCID 0000-0002-0792-050X
The University of Queensland · AUNovo Nordisk Foundation · DKCommonwealth Scientific and Industrial Research Organisation · AU

Funding

Australian Research Council DP140103514Marie Skłodowska-Curie Actions FP7-PEOPLE-2013-IOF. Project: 623679Novo Nordisk Foundation NNF10CC1016517
6 · The paper itself

Abstract

Volatile isoprenoids produced by plants are emitted in vast quantities into the atmosphere, with substantial effects on global carbon cycling. Yet, the molecular mechanisms regulating the balance between volatile and non-volatile isoprenoid production remain unknown. Isoprenoids are synthesised via sequential condensation of isopentenyl pyrophosphate (IPP) to dimethylallyl pyrophosphate (DMAPP), with volatile isoprenoids containing fewer isopentenyl subunits. The DMAPP:IPP ratio could affect the balance between volatile and non-volatile isoprenoids, but the plastidic DMAPP:IPP ratio is generally believed to be similar across different species. Here we demonstrate that the ratio of DMAPP:IPP produced by hydroxymethylbutenyl diphosphate reductase (HDR/IspH), the final step of the plastidic isoprenoid production pathway, is not fixed. Instead, this ratio varies greatly across HDRs from phylogenetically distinct plants, correlating with isoprenoid production patterns. Our findings suggest that adaptation of HDR plays a previously unrecognised role in determining in vivo carbon availability for isoprenoid emissions, directly shaping global biosphere-atmosphere interactions.

Indexed as

AcclimatizationGene Knockdown TechniquesMetabolic Networks and PathwaysMetabolomicsOxidoreductasesPhylogenyPlantsProteomicsTerpenesVolatile Organic CompoundsOxidoreductasesTerpenesVolatile Organic CompoundsA. thalianabiochemistryBVOCchemical biologyE. coliHDRIsopreneisoprenoidsMEP pathwaymonoterpenesplant biology

Identifiers

PMID32163032
PMCPMC7067565
OpenAlexW3012068785

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.