Evidence map›Paper›PMID 32162151›Full record

ArticleFish physiology and biochemistry2020

Gill transcriptomes reveal expression changes of genes related with immune and ion transport under salinity stress in silvery pomfret (Pampus argenteus).

Juan Li, Liangyi Xue, Mingyue Cao, Yu Zhang, Yajun Wang, Shanliang Xu, Baoxiao Zheng, Zhengjia Lou

Abstract read
PubMed Publisher
In one paragraph

Article in Fish physiology and biochemistry, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 44 citations in OpenAlex.

  1. Article
  2. Article
  3. RNA-Seq Reveals Adaptation Strategy in Grass Carp (International journal of molecular sciences · 2025
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Juan LiCollege of Marine Science, Ningbo University, 169 Qixing South Road, Meishan Bonded Port, Ningbo, 315832, Zhejiang, People's Republic of China.
Liangyi XueCollege of Marine Science, Ningbo University, 169 Qixing South Road, Meishan Bonded Port, Ningbo, 315832, Zhejiang, People's Republic of China. xueliangyi@nbu.edu.cn.
Mingyue CaoCollege of Marine Science, Ningbo University, 169 Qixing South Road, Meishan Bonded Port, Ningbo, 315832, Zhejiang, People's Republic of China.
Yu ZhangCollege of Marine Science, Ningbo University, 169 Qixing South Road, Meishan Bonded Port, Ningbo, 315832, Zhejiang, People's Republic of China.
Yajun WangCollege of Marine Science, Ningbo University, 169 Qixing South Road, Meishan Bonded Port, Ningbo, 315832, Zhejiang, People's Republic of China.
Shanliang XuCollege of Marine Science, Ningbo University, 169 Qixing South Road, Meishan Bonded Port, Ningbo, 315832, Zhejiang, People's Republic of China.
Baoxiao ZhengCollege of Marine Science, Ningbo University, 169 Qixing South Road, Meishan Bonded Port, Ningbo, 315832, Zhejiang, People's Republic of China.
Zhengjia LouCollege of Marine Science, Ningbo University, 169 Qixing South Road, Meishan Bonded Port, Ningbo, 315832, Zhejiang, People's Republic of China.
Ningbo University · CN

Funding

National Natural Science Foundation of China 31772869National Natural Science Foundation of China 31872586Ningbo Agricultural Major Project 2015C110003Zhejiang Major Science Project 2018C02G2070580
6 · The paper itself

Abstract

Salinity is a major ecological factor in the marine environment, and extremely important for the survival, development, and growth of fish. In this study, gill transcriptomes were examined by high-throughput sequencing at three different salinities (12 ppt as low salinity, 22 ppt as control salinity, and 32 ppt as high salinity) in an importantly economical fish silvery pomfret. A total of 187 genes were differentially expressed, including 111 up-regulated and 76 down-regulated transcripts in low-salinity treatment group and 107 genes differentially expressed, including 74 up-regulated and 33 down-regulated transcripts in high-salinity treatment group compared with the control group, respectively. Some pathways including NOD-like receptor signaling pathway, cytokine-cytokine receptor interaction, Toll-like receptor pathway, cardiac muscle contraction, and vascular smooth muscle contraction were significantly enriched. qPCR analysis further confirmed that mRNA expression levels of immune (HSP90A, IL-1β, TNFα, TLR2, IP-10, MIG, CCL19, and IL-11) and ion transport-related genes (WNK2, NPY2R, CFTR, and SLC4A2) significantly changed under salinity stress. Low salinity stress caused more intensive expression changes of immune-related genes than high salinity. These results imply that salinity stress may affect immune function in addition to regulating osmotic pressure in silvery pomfret.

Indexed as

TranscriptomeAnimalsBase SequenceDown-RegulationFishesGene Expression RegulationGillsMolecular Sequence AnnotationNLR ProteinsOsmotic PressureRandom AllocationReceptors, CytokineRNA, MessengerSalt StressSignal TransductionToll-Like ReceptorsNLR ProteinsReceptors, CytokineRNA, MessengerToll-Like ReceptorsGene expressionGill transcriptomePampus argenteusSalinity stress

Identifiers

PMID32162151
OpenAlexW3010908764

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.