Evidence map›Paper›PMID 32162091›Full record

ArticleApplied microbiology and biotechnology2020

Deletion analysis of the itaconic acid biosynthesis gene cluster components in Aspergillus pseudoterreus ATCC32359.

Shuang Deng, Ziyu Dai, Marie Swita, Kyle R Pomraning, Beth Hofstad, Ellen Panisko, Scott Baker, Jon Magnuson

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In one paragraph

Article in Applied microbiology and biotechnology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 16 citations in OpenAlex.

  1. Decoding Pecan's Fungal Foe: A Genomic Insight intoJournal of fungi (Basel, Switzerland) · 2025
    Article
  2. Genomic Analysis ofJournal of fungi (Basel, Switzerland) · 2024
    Article
  3. Article
  4. Itaconic acid production is regulated by LaeA inMetabolic engineering communications · 2022
    Article
  5. Review
  6. Review
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Shuang DengChemical and Biological Processing Group, Pacific Northwest National Laboratory, 902 Battelle Boulevard, Richland, WA, 99352, USA.ORCID http://orcid.org/0000-0002-7265-9328
Ziyu DaiChemical and Biological Processing Group, Pacific Northwest National Laboratory, 902 Battelle Boulevard, Richland, WA, 99352, USA.
Marie SwitaChemical and Biological Processing Group, Pacific Northwest National Laboratory, 902 Battelle Boulevard, Richland, WA, 99352, USA.
Kyle R PomraningChemical and Biological Processing Group, Pacific Northwest National Laboratory, 902 Battelle Boulevard, Richland, WA, 99352, USA.
Beth HofstadChemical and Biological Processing Group, Pacific Northwest National Laboratory, 902 Battelle Boulevard, Richland, WA, 99352, USA.
Ellen PaniskoChemical and Biological Processing Group, Pacific Northwest National Laboratory, 902 Battelle Boulevard, Richland, WA, 99352, USA.
Scott BakerChemical and Biological Processing Group, Pacific Northwest National Laboratory, 902 Battelle Boulevard, Richland, WA, 99352, USA.
Jon MagnusonChemical and Biological Processing Group, Pacific Northwest National Laboratory, 902 Battelle Boulevard, Richland, WA, 99352, USA. jon.magnuson@pnnl.gov.
Battelle · US

Funding

Bioenergy Technologies Office DE-NL-0011937
6 · The paper itself

Abstract

The filamentous fungus Aspergillus terreus has been successfully used for industrial production of itaconic acid (IA) for many years. The IA biosynthesis pathway has recently been characterized at a molecular genetic level as an IA gene cluster by a clone-based transcriptomic approach. The cluster consists of four genes, including genes for cis-aconitic acid decarboxylase (cadA), a predicted transcription factor (tf), a mitochondrial organic acid transporter (mttA) and an MFS (major facilitator superfamily) type transporter (mfsA). In this research, we performed expressed sequence tag (EST) analysis and systematic gene deletions to further investigate the role of those genes during IA biosynthesis in A. pseudoterreus ATCC32359. EST analysis showed a similar expression pattern among those four genes that were distinct from neighboring genes and further confirmed that they belong to the same biosynthesis cluster. Systematic gene deletion analysis demonstrated that tf, cadA, mttA and mfsA genes in the cluster are essential for IA production; deletion of any of them will either completely abolish the IA production or dramatically decrease the amount of IA produced. The tf gene plays a regulatory role in this cluster. Deletion of tf led to decreased expression levels of cadA, mttA and mfsA. More importantly, a significant amount of aconitic acid was detected in the cadA deletion strain but not in the other deletion strains. Therefore, by deleting only one gene, the cadA, we established a novel microbial host for the production of aconitic acid and other value-added chemicals from sugars in lignocellulosic biomass.

Indexed as

Gene DeletionMultigene FamilyAspergillusBiosynthetic PathwaysCloning, MolecularFungal ProteinsGene Expression ProfilingMutationSuccinatesFungal Proteinsitaconic acidSuccinatesAconitic acid (AA)Aspergillus pseudoterreus ATCC32359cis-aconitic acid decarboxylase (cadA)Itaconic acid (IA)Transporter

Identifiers

PMID32162091
OpenAlexW3012105005

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.