Evidence map›Paper›PMID 32161340›Full record

ArticleScientific reports2020

Adaptations of Interferon Regulatory Factor 3 with Transition from Terrestrial to Aquatic Life.

Monica Angeletti, Wan-Ling Nicole Hsu, Nashaat Majo, Hideaki Moriyama, Etsuko N Moriyama, Luwen Zhang

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 22 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Monica AngelettiSchool of Biological Sciences, University of Nebraska, Lincoln, NE, 68588, USA.
Wan-Ling Nicole HsuSchool of Biological Sciences, University of Nebraska, Lincoln, NE, 68588, USA.
Nashaat MajoSchool of Biological Sciences, University of Nebraska, Lincoln, NE, 68588, USA.
Hideaki MoriyamaSchool of Biological Sciences, University of Nebraska, Lincoln, NE, 68588, USA.
Etsuko N MoriyamaSchool of Biological Sciences, University of Nebraska, Lincoln, NE, 68588, USA. emoriyama2@unl.edu.
Luwen ZhangSchool of Biological Sciences, University of Nebraska, Lincoln, NE, 68588, USA. lzhang2@unl.edu.
University of Nebraska–Lincoln · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Interferon regulatory factor 3 (IRF3) and IRF7 are closely related IRF members and the major factors for the induction of interferons, a key component in vertebrate innate immunity. However, there is limited knowledge regarding the evolution and adaptation of those IRFs to the environments. Two unique motifs in IRF3 and 7 were identified. One motif, GASSL, is highly conserved throughout the evolution of IRF3 and 7 and located in the signal response domain. Another motif, DPHK, is in the DNA-binding domain. The ancestral protein of IRF3 and 7 seemed to possess the DPHK motif. In the ray-finned fish lineage, while the DPHK is maintained in IRF7, the motif in IRF3 is changed to NPHK with a D → N amino acid substitution. The D → N substitution are also found in amphibian IRF3 but not in amphibian IRF7. Terrestrial animals such as reptiles and mammals predominantly use DPHK sequences in both IRF3 and 7. However, the D → N substitution in IRF3 DPHK is again found in cetaceans such as whales and dolphins as well as in marsupials. These observations suggest that the D → N substitutions in the IRF3 DPHK motif is likely to be associated with vertebrate's adaptations to aquatic environments and other environmental changes.

Indexed as

Adaptation, BiologicalBiological EvolutionAmino Acid MotifsAmino Acid SequenceAnimalsConserved SequenceEvolution, MolecularInterferon Regulatory Factor-3Interferon Regulatory Factor-7MammalsModels, MolecularPhylogenyProtein ConformationInterferon Regulatory Factor-3Interferon Regulatory Factor-7

Identifiers

PMID32161340
PMCPMC7066157
OpenAlexW3012487301

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.