Evidence map›Paper›PMID 32161289›Full record

ArticleScientific reports2020

Antigenic characterization of novel H1 influenza A viruses in swine.

Rodrigo Tapia, Montserrat Torremorell, Marie Culhane, Rafael A Medina, Víctor Neira

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 42 citations in OpenAlex.

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  11. Review of genome sequencing technologies in molecular characterization of influenza A viruses in swine.Journal of veterinary diagnostic investigation : official publication of the American Association of Veterinary Laboratory Diagnosticians, Inc · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Rodrigo TapiaDepartamento de Medicina Preventiva Animal, Facultad de Ciencias Veterinarias y Pecuarias, Universidad de Chile, Santiago, 8820808, Chile.ORCID http://orcid.org/0000-0003-4572-2026
Montserrat TorremorellDepartment of Veterinary Population Medicine, College of Veterinary Medicine, University of Minnesota, St. Paul, 55108, USA.
Marie CulhaneDepartment of Veterinary Population Medicine, College of Veterinary Medicine, University of Minnesota, St. Paul, 55108, USA.ORCID http://orcid.org/0000-0002-3547-7576
Rafael A MedinaDepartamento de Enfermedades Infecciosas e Inmunología Pediátrica, Escuela de Medicina, Pontificia Universidad Católica de Chile, Santiago, 8330024, Chile. rmedinai@uc.cl.
Víctor NeiraDepartamento de Medicina Preventiva Animal, Facultad de Ciencias Veterinarias y Pecuarias, Universidad de Chile, Santiago, 8820808, Chile. victorneira@u.uchile.cl.
University of Chile · CLUniversity of Minnesota · USPontificia Universidad Católica de Chile · CL

Funding

NIAID NIH HHS HHSN272201400008C
6 · The paper itself

Abstract

Novel H1N2 influenza A viruses (IAVs) in swine have been identified in Chile co-circulating with pandemic H1N1 2009-like (A(H1N1)pdm09-like) viruses. The objective of this study was to characterize antigenically the swine H1 IAVs circulating in Chile. Genetic analysis based on the HA1 domain and antigenic analysis by hemagglutination inhibition assay were carried out. Three antigenic clusters were identified, named Chilean H1 A (ChH1A), Chilean H1 B (ChH1B), and A(H1N1)pdm09-like. The antigenic sites of ChH1A and ChH1B strains were 10-60% distant from those of commercial vaccine strains at the amino acid sequence level. Antigenic variants were identified within the clusters ChH1A and A(H1N1)pdm09-like. Substitutions in the main antigenic sites (E153G in Sa, Q193H in Sb, D168N in Ca1, P137S in Ca2, and F71L in Cb) were detected in variants from the ChH1A cluster, whereas only a single substitution in antigenic site Sa (G155E) was detected in variants from A(H1N1)pdm09-like cluster, which confirms the importance to carrying out antigenic analyses in addition to genetic analyses to evaluate control measures such as vaccination. These results highlight the need to update vaccines for swine in Chile and the importance of continued surveillance to determine the onward transmission of antigenic variants in Chilean pig populations.

Indexed as

Amino Acid SequenceAnimalsAntigenic VariationAntigens, ViralHemagglutinin Glycoproteins, Influenza VirusHost-Pathogen InteractionsInfluenza A Virus, H1N1 SubtypeOrthomyxoviridae InfectionsPhylogenySequence Analysis, DNASwineSwine DiseasesAntigens, ViralHemagglutinin Glycoproteins, Influenza Virus

Identifiers

PMID32161289
PMCPMC7066140
OpenAlexW3011261002

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.