Evidence map›Paper›PMID 32161168›Full record

ArticleJournal of virology2020

Loss of IKK Subunits Limits NF-κB Signaling in Reovirus-Infected Cells.

Andrew J McNamara, Pranav Danthi

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.3field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 13 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Cell Killing by Reovirus: Mechanisms and Consequences.Current topics in microbiology and immunology · 2023
    Review
  5. Article
  6. Article
  7. Article
  8. BovineFrontiers in immunology · 2021
    Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Andrew J McNamaraDepartment of Biology, Indiana University, Bloomington, Indiana, USA.
Pranav DanthiDepartment of Biology, Indiana University, Bloomington, Indiana, USA pdanthi@indiana.edu.ORCID 0000-0001-6199-6022
Indiana University Bloomington · US

Funding

Quality Assurance and Quality Control Project Management: Improving Submissions and Study Conduct in the Human Subjects Research Prior Approval ProcessUL1TR002529 · NCATS · INDIANA UNIVERSITY INDIANAPOLIS · PI MOE, SHARON M, WIEHE, SARAH ELIZABETH · 2018 to 2022
$27.2M
Regulating the Detection of Reovirus InfectionR01AI110637 · NIAID · TRUSTEES OF INDIANA UNIVERSITY · PI Pranav Danthi · 2014 to 2026
$4.5M
NCATS NIH HHS UL1 TR002529NIAID NIH HHS R01 AI110637
6 · The paper itself

Abstract

Viruses commonly antagonize innate immune pathways that are primarily driven by nuclear factor kappa B (NF-κB), interferon regulatory factor (IRF), and the signal transducer and activator of transcription proteins (STAT) family of transcription factors. Such a strategy allows viruses to evade immune surveillance and maximize their replication. Using an unbiased transcriptome sequencing (RNA-seq)-based approach to measure gene expression induced by transfected viral genomic RNA (vgRNA) and reovirus infection, we discovered that mammalian reovirus inhibits host cell innate immune signaling. We found that, while vgRNA and reovirus infection both induce a similar IRF-dependent gene expression program, gene expression driven by the NF-κB family of transcription factors is lower in infected cells. Potent agonists of NF-κB such as tumor necrosis factor alpha (TNF-α) and vgRNA failed to induce NF-κB-dependent gene expression in infected cells. We demonstrate that NF-κB signaling is blocked due to loss of critical members of the inhibitor of kappa B kinase (IKK) complex,

Indexed as

AnimalsCell LineGene Expression RegulationI-kappa B KinaseMiceMice, KnockoutNF-kappa BReoviridaeReoviridae InfectionsSignal TransductionTranscriptomeTumor Necrosis Factor-alphaI-kappa B KinaseNF-kappa BTumor Necrosis Factor-alphainnate immunityNF-κBreovirus

Identifiers

PMID32161168
PMCPMC7199397
OpenAlexW3011953859

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.