Evidence map›Paper›PMID 32160916›Full record

ArticleJournal of ovarian research2020

Systematic analysis of ovarian cancer platinum-resistance mechanisms via text mining.

Haixia Li, Jinghua Li, Wanli Gao, Cheng Zhen, Limin Feng

Open access · goldAbstract read
In one paragraph

Article in Journal of ovarian research, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
3.8field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 23 citations in OpenAlex.

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  6. CD44Journal of the Egyptian National Cancer Institute · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Haixia LiDepartment of Obstetrics & Gynecology, Beijing TianTan Hospital, Capital Medical University, Bejing, 100050, China.
Jinghua LiDepartment of Obstetrics & Gynecology, Beijing TianTan Hospital, Capital Medical University, Bejing, 100050, China.
Wanli GaoDepartment of Obstetrics & Gynecology, Beijing TianTan Hospital, Capital Medical University, Bejing, 100050, China.
Cheng ZhenThe Fifth Medical Center of Chinese PLA General Hospital, Beijing, 100039, China. zhencheng302@126.com.
Limin FengDepartment of Obstetrics & Gynecology, Beijing TianTan Hospital, Capital Medical University, Bejing, 100050, China. lucyfeng66@163.com.
Beijing Tian Tan Hospital · CNCapital Medical University · CNChinese PLA General Hospital · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundPlatinum resistance is an important cause of clinical recurrence and death for ovarian cancer. This study tries to systematically explore the molecular mechanisms for platinum resistance in ovarian cancer and identify regulatory genes and pathways via text mining and other methods.

methodsGenes in abstracts of associated literatures were identified. Gene ontology and protein-protein interaction (PPI) network analysis were performed. Then co-occurrence between genes and ovarian cancer subtypes were carried out followed by cluster analysis.

resultsGenes with highest frequencies are mostly involved in DNA repair, apoptosis, metal transport and drug detoxification, which are closely related to platinum resistance. Gene ontology analysis confirms this result. Some proteins such as TP53, HSP90, ESR1, AKT1, BRCA1, EGFR and CTNNB1 work as hub nodes in PPI network. According to cluster analysis, specific genes were highlighted in each subtype of ovarian cancer, indicating that various subtypes may have different resistance mechanisms respectively.

conclusionsPlatinum resistance in ovarian cancer involves complicated signaling pathways and different subtypes may have specific mechanisms. Text mining, combined with other bio-information methods, is an effective way for systematic analysis.

Indexed as

Data MiningDrug Resistance, NeoplasmAntineoplastic AgentsCluster AnalysisComputational BiologyFemaleGene Expression ProfilingGene Expression Regulation, NeoplasticGene Regulatory NetworksHumansOrganoplatinum CompoundsOvarian NeoplasmsProtein Interaction MappingProtein Interaction MapsTranscriptomeAntineoplastic AgentsOrganoplatinum CompoundsOvarian cancerPlatinum resistanceText mining

Identifiers

PMID32160916
PMCPMC7066848
OpenAlexW3010835914

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.