Evidence map›Paper›PMID 32160469›Full record

ArticleThe journal of physical chemistry. B2020

Ultrafast Formation of the Charge Transfer State of Prodan Reveals Unique Aspects of the Chromophore Environment.

Swapnil Baral, Matthew Phillips, Han Yan, Joseph Avenso, Lars Gundlach, Björn Baumeier, Edward Lyman

Abstract read
In one paragraph

Article in The journal of physical chemistry. B, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Swapnil BaralDepartment of Physics and Astronomy, University of Delaware, Newark, Delaware 19716, United States.
Matthew PhillipsDepartment of Chemistry and Biochemistry, University of Delaware, Newark, Delaware 19716, United States.
Han YanDepartment of Chemistry and Biochemistry, University of Delaware, Newark, Delaware 19716, United States.
Joseph AvensoDepartment of Physics and Astronomy, University of Delaware, Newark, Delaware 19716, United States.
Lars GundlachDepartment of Physics and Astronomy, University of Delaware, Newark, Delaware 19716, United States.ORCID 0000-0002-4312-0614
Björn BaumeierDepartment of Mathematics and Computer Science, Eindhoven University of Technology, P.O. Box 513, Eindhoven 5600 MB, The Netherlands.ORCID 0000-0002-6077-0467
Edward LymanDepartment of Physics and Astronomy, University of Delaware, Newark, Delaware 19716, United States.ORCID 0000-0003-4590-0363

Funding

Breakthrough Molecular Dynamics Research via an Anton2 SupercomputerR01GM116961 · NIGMS · CARNEGIE-MELLON UNIVERSITY · PI BLOOD, PHILIP D. · 2016 to 2023
$3.0M
Effects of lipidomic diversity on GPCRR01GM120351 · NIGMS · UNIVERSITY OF DELAWARE · PI LYMAN, EDWARD RAY · 2017 to 2021
$1.6M
NIGMS NIH HHS R01 GM116961NIGMS NIH HHS R01 GM120351
6 · The paper itself

Abstract

Lipophilic dyes such as laurdan and prodan are widely used in membrane biology due to a strong bathochromic shift in emission that reports the structural parameters of the membrane such as area per molecule. Disentangling of the factors which control the spectral shift is complicated by the stabilization of a charge-transfer-like excitation of the dye in polar environments. Predicting the emission therefore requires modeling both the relaxation of the environment and the corresponding evolution of the excited state. Here, an approach is presented in which (i) the local environment is sampled by a classical molecular dynamics (MD) simulation of the dye and solvent, (ii) the electronically excited state of prodan upon light absorption is predicted by numerical quantum mechanics (QM), (iii) the iterative relaxation of the environment around the excited dye by MD coupled with the evolution of the excited state is performed, and (iv) the emission properties are predicted by QM. The QM steps are computed using the many-body Green's function in the

Indexed as

Molecular Dynamics Simulation2-NaphthylamineSolvents2-NaphthylamineprodanSolvents

Identifiers

PMID32160469
PMCPMC7587403

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.