Evidence map›Paper›PMID 32159767›Full record

ArticleMolecular biology and evolution2020

Phylogenetics Identifies Two Eumetazoan TRPM Clades and an Eighth TRP Family, TRP Soromelastatin (TRPS).

Nathaniel J Himmel, Thomas R Gray, Daniel N Cox

Erratum issuedOpen access · hybridAbstract readComparative Study
In one paragraph

Article in Molecular biology and evolution, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 23 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed, 1 pooled it
9.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 1 synthesis or guideline pooled it, 38 citations in OpenAlex.

  1. Pooled it
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  9. Evolution of Sensory Receptors.Annual review of cell and developmental biology · 2024
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Nathaniel J HimmelNeuroscience Institute, Georgia State University, Atlanta, GA.
Thomas R GrayNeuroscience Institute, Georgia State University, Atlanta, GA.
Daniel N CoxNeuroscience Institute, Georgia State University, Atlanta, GA.
Georgia State University · US

Funding

Molecular and Computational Dissection of Cold NociceptionR01NS115209 · NINDS · GEORGIA STATE UNIVERSITY · PI GENNADY S CYMBALYUK, Daniel N Cox · 2019 to 2026
$3.5M
Georgia State University Initiative for Maximizing Student DevelopmentR25GM109442 · NIGMS · GEORGIA STATE UNIVERSITY · PI COX, DANIEL N, FRANTZ, KYLE J. · 2016 to 2020
$1.0M
NIGMS NIH HHS R25 GM109442NINDS NIH HHS R01 NS115209
6 · The paper itself

Abstract

Transient receptor potential melastatins (TRPMs) are most well known as cold and menthol sensors, but are in fact broadly critical for life, from ion homeostasis to reproduction. Yet, the evolutionary relationship between TRPM channels remains largely unresolved, particularly with respect to the placement of several highly divergent members. To characterize the evolution of TRPM and like channels, we performed a large-scale phylogenetic analysis of >1,300 TRPM-like sequences from 14 phyla (Annelida, Arthropoda, Brachiopoda, Chordata, Cnidaria, Echinodermata, Hemichordata, Mollusca, Nematoda, Nemertea, Phoronida, Priapulida, Tardigrada, and Xenacoelomorpha), including sequences from a variety of recently sequenced genomes that fill what would otherwise be substantial taxonomic gaps. These findings suggest: 1) the previously recognized TRPM family is in fact two distinct families, including canonical TRPM channels and an eighth major previously undescribed family of animal TRP channel, TRP soromelastatin; 2) two TRPM clades predate the last bilaterian-cnidarian ancestor; and 3) the vertebrate-centric trend of categorizing TRPM channels as 1-8 is inappropriate for most phyla, including other chordates.

Indexed as

Evolution, MolecularPhylogenyAnimalsCnidariaHumansMultigene FamilyProtein DomainsTRPM Cation ChannelsVertebratesTRPM Cation Channelsced-11channel evolutionphylogeneticstransient receptor potentialTRPMTRPS

Identifiers

PMID32159767
PMCPMC7306681
OpenAlexW3011409974

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.