Evidence map›Paper›PMID 32159514›Full record

ArticleeLife2020

Losing Dnmt3a dependent methylation in inhibitory neurons impairs neural function by a mechanism impacting Rett syndrome.

Laura A Lavery, Kerstin Ure, Ying-Wooi Wan, Chongyuan Luo, Alexander J Trostle, Wei Wang, Haijing Jin, Joanna Lopez, Jacinta Lucero, Mark A Durham and 7 more

Open access · goldAbstract read
In one paragraph

Article in eLife, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
7.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 57 citations in OpenAlex.

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  8. DNA Methylation in Long-Term Memory.Physiology (Bethesda, Md.) · 2025
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 2 institutions in 1 country.

Laura A LaveryJan and Dan Duncan Neurological Research Institute at Texas Children's Hospital, Houston, United States.ORCID 0000-0002-7153-0266
Kerstin UreJan and Dan Duncan Neurological Research Institute at Texas Children's Hospital, Houston, United States.
Ying-Wooi WanJan and Dan Duncan Neurological Research Institute at Texas Children's Hospital, Houston, United States.
Chongyuan LuoGenomic Analysis Laboratory, The Salk Institute for Biological Studies, La Jolla, United States.ORCID 0000-0002-8541-0695
Alexander J TrostleJan and Dan Duncan Neurological Research Institute at Texas Children's Hospital, Houston, United States.
Wei WangJan and Dan Duncan Neurological Research Institute at Texas Children's Hospital, Houston, United States.
Haijing JinGraduate Program in Quantitative and Computational Biosciences, Baylor College of Medicine, Houston, United States.
Joanna LopezJan and Dan Duncan Neurological Research Institute at Texas Children's Hospital, Houston, United States.
Jacinta LuceroComputational Neurobiology Laboratory, The Salk Institute for Biological Studies, La Jolla, United States.
Mark A DurhamProgram in Developmental Biology, Baylor College of Medicine, Houston, United States.
Rosa CastanonGenomic Analysis Laboratory, The Salk Institute for Biological Studies, La Jolla, United States.
Joseph R NeryGenomic Analysis Laboratory, The Salk Institute for Biological Studies, La Jolla, United States.
Zhandong LiuJan and Dan Duncan Neurological Research Institute at Texas Children's Hospital, Houston, United States.
Margaret GoodellDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, United States.ORCID 0000-0003-1111-2932
Joseph R EckerGenomic Analysis Laboratory, The Salk Institute for Biological Studies, La Jolla, United States.ORCID 0000-0001-5799-5895
M Margarita BehrensComputational Neurobiology Laboratory, The Salk Institute for Biological Studies, La Jolla, United States.
Huda Y ZoghbiJan and Dan Duncan Neurological Research Institute at Texas Children's Hospital, Houston, United States.ORCID 0000-0002-0700-3349
Baylor College of Medicine · USSalk Institute for Biological Studies · US

Funding

Viral Vector Core (VVC)P30CA014195 · NCI · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI Ye Zheng · 1985 to 2026
$82.8M
Preclinical and Clincial OutcomesP50HD103555 · NICHD · BAYLOR COLLEGE OF MEDICINE · PI MIRJANA MALETIC-SAVATIC · 2020 to 2026
$9.9M
Steps towards a paternal gene activation therapy for Angelman syndromeU54HD083092 · NICHD · BAYLOR COLLEGE OF MEDICINE · PI NELSON, DAVID LOREN, NEUL, JEFFREY L · 2014 to 2019
$7.8M
MOLECULAR PATHOGENESIS STUDIES OF RETT SYNDROMER01NS057819 · NINDS · BAYLOR COLLEGE OF MEDICINE · PI ZOGHBI, HUDA Y · 2006 to 2025
$7.5M
The role of DNA methylation dynamics and patterning in postmitotic neuronal-maturationR01MH112763 · NIMH · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI BEHRENS, M MARGARITA, ECKER, JOSEPH R · 2017 to 2021
$3.4M
Howard Hughes Medical InstituteNCI NIH HHS P30 014195NICHD NIH HHS P50 HD103555NICHD NIH HHS U54 HD083092NIMH NIH HHS R01 MH112763NINDS NIH HHS 5R01NS057819-13NINDS NIH HHS R01 NS057819
6 · The paper itself

Abstract

Methylated cytosine is an effector of epigenetic gene regulation. In the brain, Dnmt3a is the sole 'writer' of atypical non-CpG methylation (mCH), and MeCP2 is the only known 'reader' for mCH. We asked if MeCP2 is the sole reader for Dnmt3a dependent methylation by comparing mice lacking either protein in GABAergic inhibitory neurons. Loss of either protein causes overlapping and distinct features from the behavioral to molecular level. Loss of Dnmt3a causes global loss of mCH and a subset of mCG sites resulting in more widespread transcriptional alterations and severe neurological dysfunction than MeCP2 loss. These data suggest that MeCP2 is responsible for reading only part of the Dnmt3a dependent methylation in the brain. Importantly, the impact of MeCP2 on genes differentially expressed in both models shows a strong dependence on mCH, but not Dnmt3a dependent mCG, consistent with mCH playing a central role in the pathogenesis of Rett Syndrome.

Indexed as

AnimalsDNA (Cytosine-5-)-MethyltransferasesDNA Methyltransferase 3AFemaleGABAergic NeuronsGene Expression Regulation, DevelopmentalGenetic Predisposition to DiseaseMaleMethyl-CpG-Binding Protein 2MiceRett SyndromeDNA (Cytosine-5-)-MethyltransferasesDNA Methyltransferase 3ADNMT3A protein, humanDnmt3a protein, mouseMecp2 protein, mouseMethyl-CpG-Binding Protein 2chromosomesDnmt3agene expressioninhibitory neuronMeCP2mouseneurosciencenon-CpG methylationRett syndrome

Identifiers

PMID32159514
PMCPMC7065908
OpenAlexW3012281718

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.