Evidence map›Paper›PMID 32157408›Full record

ArticleWorld journal of microbiology & biotechnology2020

Thermostable endoglucanase gene derived by amplification from the genomic DNA of a cellulose-enriched mixed culture from mudspring water of Mt. Makiling, Laguna, Philippines.

Richard D Tambalo, Asuncion K Raymundo, Amy M Grunden

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Article in World journal of microbiology & biotechnology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.3field-weighted citation impact, top 50% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 3 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 2 countries.

Richard D TambaloBIOTECH, University of the Philippines Los Baños, 4031, College, Laguna, Philippines. rdtambalo@up.edu.ph.ORCID http://orcid.org/0000-0003-0374-7508
Asuncion K RaymundoMicrobiology Division, IBS, U.P. Los Baños, Philippines, 4031, College, Laguna, Philippines.
Amy M GrundenDepartment of Plant and Microbial Biology, North Carolina State University, 4550A Thomas Hall, Box 7612, Raleigh, NC, 27695, USA.
University of the Philippines Los Baños · PHNorth Carolina State University · US

Funding

CSRD VA 1
6 · The paper itself

Abstract

Culture-independent molecular-based approaches can be used to identify genes of interest from environmental sources that have desirable properties such as thermo activity. For this study, a putative thermo stable endoglucanase gene was identified from a mixed culture resulting from the inoculation of Brock-CMcellulose (1%) broth with mudspring water from Mt. Makiling, Laguna, Philippines that had been incubated at 90 °C. Genomic DNA was extracted from the cellulose-enriched mixed culture and endo1949 forward and reverse primers were used to amplify the endoglucanase gene, which was cloned into pCR-script plasmid vector. Blastn alignment of the sequenced insert revealed 99.69% similarity to the glycosyl hydrolase, sso1354 (CelA1; Q97YG7) from Saccharolobus solfataricus. The endoglucanase gene (GenBank accession number MK984682) was determined to be 1,021 nucleotide bases in length, corresponding to 333 amino acids with a molecular mass of ~ 37 kDa. The endoglucanase gene was inserted into a pET21 vector and transformed in E. coli BL21 for expression. Partially purified recombinant Mt. Makiling endoglucanase (MM-Engl) showed a specific activity of 187.61 U/mg and demonstrated heat stability up to 80 °C. The thermo-acid stable endoglucanase can be used in a supplementary hydrolysis step to further hydrolyze the lignocellulosic materials that were previously treated under high temperature-dilute acid conditions, thereby enhancing the release of more glucose sugars for bioethanol production.

Indexed as

DNAGenomicsAmino Acid SequenceArchaeaBacteriaBase SequenceCellulaseCelluloseCloning, MolecularEnzyme StabilityEscherichia coliHydrogen-Ion ConcentrationMolecular WeightPhilippinesRecombinant ProteinsSequence AlignmentCellulaseCelluloseDNARecombinant ProteinsWaterEndoglucanaseLignocellulose hydrolysisMt. Makiling mudspringSaccharolobusThermophiles

Identifiers

PMID32157408
OpenAlexW3012004857

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.