Evidence map›Paper›PMID 32156795›Full record

ArticlemSystems2020

Carbon Assimilation Strategies in Ultrabasic Groundwater: Clues from the Integrated Study of a Serpentinization-Influenced Aquifer.

Lauren M Seyler, William J Brazelton, Craig McLean, Lindsay I Putman, Alex Hyer, Michael D Y Kubo, Tori Hoehler, Dawn Cardace, Matthew O Schrenk

Open access · goldAbstract read
In one paragraph

Article in mSystems, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Deep-branching acetogens in serpentinized subsurface fluids of Oman.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 6 institutions in 1 country.

Lauren M SeylerMarine Chemistry and Geochemistry, Woods Hole Oceanographic Institution, Woods Hole, Massachusetts, USA lmseyler@gmail.com.ORCID https://orcid.org/0000-0002-5194-3653
William J BrazeltonDepartment of Biology, University of Utah, Salt Lake City, Utah, USA.ORCID https://orcid.org/0000-0003-0933-0148
Craig McLeanMarine Chemistry and Geochemistry, Woods Hole Oceanographic Institution, Woods Hole, Massachusetts, USA.
Lindsay I PutmanDepartment of Earth and Environmental Sciences, Michigan State University, East Lansing, Michigan, USA.
Alex HyerDepartment of Biology, University of Utah, Salt Lake City, Utah, USA.
Michael D Y KuboBlue Marble Space Institute of Science, Seattle, Washington, USA.
Tori HoehlerSpace Sciences Division, NASA Ames Research Center, Mountain View, California, USA.
Dawn CardaceDepartment of Geosciences, University of Rhode Island, Kingston, Rhode Island, USA.
Matthew O SchrenkDepartment of Earth and Environmental Sciences, Michigan State University, East Lansing, Michigan, USA.
Ames Research Center · USMichigan State University · USUniversity of Utah · USBlue Marble Space · USMassachusetts Institute of Technology · USUniversity of Rhode Island · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Serpentinization is a low-temperature metamorphic process by which ultramafic rock chemically reacts with water. Such reactions provide energy and materials that may be harnessed by chemosynthetic microbial communities at hydrothermal springs and in the subsurface. However, the biogeochemistry mediated by microbial populations that inhabit these environments is understudied and complicated by overlapping biotic and abiotic processes. We applied metagenomics, metatranscriptomics, and untargeted metabolomics techniques to environmental samples taken from the Coast Range Ophiolite Microbial Observatory (CROMO), a subsurface observatory consisting of 12 wells drilled into the ultramafic and serpentinite mélange of the Coast Range Ophiolite in California. Using a combination of DNA and RNA sequence data and mass spectrometry data, we found evidence for several carbon fixation and assimilation strategies, including the Calvin-Benson-Bassham cycle, the reverse tricarboxylic acid cycle, the reductive acetyl coenzyme A (acetyl-CoA) pathway, and methylotrophy, in the microbial communities inhabiting the serpentinite-hosted aquifer. Our data also suggest that the microbial inhabitants of CROMO use products of the serpentinization process, including methane and formate, as carbon sources in a hyperalkaline environment where dissolved inorganic carbon is unavailable.

Indexed as

carbon assimilationcarbon fixationformaldehydeformatemethaneserpentinization

Identifiers

PMID32156795
PMCPMC7065513
OpenAlexW3012188228

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.