Evidence map›Paper›PMID 32156293›Full record

ArticleMicrobial cell factories2020

Effect of DR1558, a Deinococcus radiodurans response regulator, on the production of GABA in the recombinant Escherichia coli under low pH conditions.

Sung-Ho Park, Yu Jung Sohn, Si Jae Park, Jong-Il Choi

Open access · goldAbstract read
In one paragraph

Article in Microbial cell factories, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Intracellular Flux Prediction of RecombinantJournal of microbiology and biotechnology · 2024
    Article
  5. Review
  6. Review
  7. Article
  8. Comparative genomics ofFrontiers in microbiology · 2024
    Article
  9. Microorganisms · 2023
    Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Sung-Ho ParkDepartment of Biotechnology and Bioengineering, Interdisciplinary Program for Bioenergy & Biomaterials, Chonnam National University, 77 Yongbong-ro, Gwangju, 61186, Republic of Korea.
Yu Jung SohnDivision of Chemical Engineering and Materials Science, Ewha Womans University, 52 Ewhayeodae-gil, Seodaemun-gu, Seoul, 03760, Republic of Korea.
Si Jae ParkDivision of Chemical Engineering and Materials Science, Ewha Womans University, 52 Ewhayeodae-gil, Seodaemun-gu, Seoul, 03760, Republic of Korea. parksj93@ewha.ac.kr.
Jong-Il ChoiDepartment of Biotechnology and Bioengineering, Interdisciplinary Program for Bioenergy & Biomaterials, Chonnam National University, 77 Yongbong-ro, Gwangju, 61186, Republic of Korea. choiji01@jnu.ac.kr.
Chonnam National University · KREwha Womans University · KR

Funding

Ministry of Oceans and Fisheries 213008-05-3-SB910National Research Foundation of Korea NRF-2018 M3D3A1A01017988National Research Foundation of Korea NRF-2018R1D1A1B07049359
6 · The paper itself

Abstract

backgroundGamma aminobutyric acid (GABA) is an important platform chemical, which has been used as a food additive and drug. Additionally, GABA is a precursor of 2-pyrrolidone, which is used in nylon synthesis. GABA is usually synthesized from glutamate in a reaction catalyzed by glutamate decarboxylase (GAD). Currently, there are several reports on GABA production from monosodium glutamate (MSG) or glucose using engineered microbes. However, the optimal pH for GAD activity is 4, which is the limiting factor for the efficient microbial fermentative production of GABA as fermentations are performed at pH 7. Recently, DR1558, a response regulator in the two-component signal transduction system was identified in Deinococcus radiodurans. DR1558 is reported to confer cellular robustness to cells by binding the promoter regions of genes via DNA-binding domains or by binding to the effector molecules, which enable the microorganisms to survive in various environmental stress conditions, such as oxidative stress, high osmotic shock, and low pH.

resultsIn this study, the effect of DR1558 in enhancing GABA production was examined using two different strategies: whole-cell bioconversion of GABA from MSG and direct fermentative production of GABA from glucose under acidic culture conditions. In the whole-cell bioconversion, GABA produced by E. coli expressing GadBC and DR1558 (6.52 g/L GABA from 13 g/L MSG·H

conclusionThis is the first report to demonstrate GABA production by acidic fermentation and to provide an engineering strategy for conferring acid resistance to the recombinant E. coli for GABA production.

Indexed as

Metabolic EngineeringBacterial ProteinsDeinococcusEscherichia coliEscherichia coli ProteinsFermentationgamma-Aminobutyric AcidGene Expression Regulation, BacterialGlucoseGlutamate DecarboxylaseGlutamic AcidHydrogen-Ion ConcentrationBacterial ProteinsEscherichia coli Proteinsgamma-Aminobutyric AcidGlucoseGlutamate DecarboxylaseGlutamic AcidAcid resistanceDeinococcus radioduransDR1558Escherichia coliGamma aminobutyrate

Identifiers

PMID32156293
PMCPMC7063819
OpenAlexW3011868083

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.