Evidence map›Paper›PMID 32153648›Full record

ArticleFrontiers in genetics2020

Metabolome Analysis Identified Okaramines in the Soybean Rhizosphere as a Legacy of Hairy Vetch.

Nozomu Sakurai, Hossein Mardani-Korrani, Masaru Nakayasu, Kazuhiko Matsuda, Kumiko Ochiai, Masaru Kobayashi, Yusuke Tahara, Takeshi Onodera, Yuichi Aoki, Takashi Motobayashi and 5 more

Open access · goldAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Frontiers in genetics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Article
  3. International journal of molecular sciences · 2024
    Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 7 institutions in 1 country.

Nozomu SakuraiBioinformation and DDBJ Center, National Institute of Genetics, Mishima, Japan.
Hossein Mardani-KorraniDepartment of International Environmental and Agricultural Sciences, Faculty of Agriculture, Tokyo University of Agriculture and Technology, Fuchu, Japan.
Masaru NakayasuResearch Institute for Sustainable Humanosphere, Kyoto University, Gokasho, Japan.
Kazuhiko MatsudaDepartment of Applied Biological Chemistry, Faculty of Agriculture, Kindai University, Nara, Japan.
Kumiko OchiaiDivision of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Kyoto, Japan.
Masaru KobayashiDivision of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Kyoto, Japan.
Yusuke TaharaResearch and Development Center for Five-Sense Devices, Kyushu University, Fukuoka, Japan.
Takeshi OnoderaFaculty of Information Science and Electrical Engineering, Kyushu University, Fukuoka, Japan.
Yuichi AokiTohoku Medical Megabank Organization, Tohoku University, Sendai, Japan.
Takashi MotobayashiDepartment of International Environmental and Agricultural Sciences, Faculty of Agriculture, Tokyo University of Agriculture and Technology, Fuchu, Japan.
Masakazu KomatsuzakiCenter for Field Agriculture Research & Education, Ibaraki University, Ami, Japan.
Makoto IharaDepartment of Applied Biological Chemistry, Faculty of Agriculture, Kindai University, Nara, Japan.
Daisuke ShibataKazusa DNA Research Institute, Kisarazu, Japan.
Yoshiharu FujiiDepartment of International Environmental and Agricultural Sciences, Faculty of Agriculture, Tokyo University of Agriculture and Technology, Fuchu, Japan.
Akifumi SugiyamaResearch Institute for Sustainable Humanosphere, Kyoto University, Gokasho, Japan.
Kyoto University · JPTokyo University of Agriculture and Technology · JPKazusa DNA Research Institute · JPKindai University · JPKyushu University · JPIbaraki University · JPTohoku Medical Megabank Organization · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Inter-organismal communications below ground, such as plant-microbe interactions in the rhizosphere, affect plant growth. Metabolites are shown to play important roles in biological communication, but there still remain a large number of metabolites in soil to be uncovered. Metabolomics, a technique for the comprehensive analysis of metabolites in samples, may uncover the molecules that intermediate these interactions. We conducted a multivariate analysis using liquid chromatography (LC)-mass spectrometry (MS)-based untargeted metabolomics in several soil samples and also targeted metabolome analysis for the identification of the candidate compounds in soil. We identified okaramine A, B, and C in the rhizosphere soil of hairy vetch. Okaramines are indole alkaloids first identified in soybean pulp (

Indexed as

hairy vetchokaraminerhizospheresoybeanuntargeted metabolomics

Identifiers

PMID32153648
PMCPMC7049541
OpenAlexW3007022001

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.