Evidence map›Paper›PMID 32153350›Full record

ArticleFrontiers in neuroscience2020

Regionally Distinct Astrocytes Display Unique Transcription Factor Profiles in the Adult Brain.

Brittney Lozzi, Teng-Wei Huang, Debosmita Sardar, Anna Yu-Szu Huang, Benjamin Deneen

Open access · goldAbstract read
In one paragraph

Article in Frontiers in neuroscience, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 98 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Brittney LozziCenter for Cell and Gene Therapy, Baylor College of Medicine, Houston, TX, United States.
Teng-Wei HuangCenter for Cell and Gene Therapy, Baylor College of Medicine, Houston, TX, United States.
Debosmita SardarCenter for Cell and Gene Therapy, Baylor College of Medicine, Houston, TX, United States.
Anna Yu-Szu HuangCenter for Cell and Gene Therapy, Baylor College of Medicine, Houston, TX, United States.
Benjamin DeneenCenter for Cell and Gene Therapy, Baylor College of Medicine, Houston, TX, United States.
Baylor College of Medicine · US

Funding

Transcriptional regulation of gliogenesis in the CNSR01NS071153 · NINDS · BAYLOR COLLEGE OF MEDICINE · PI DENEEN, BENJAMIN · 2010 to 2022
$5.0M
Decoding the role of diverse astrocyte populations in aging and ADRF1AG054111 · NIA · BAYLOR COLLEGE OF MEDICINE · PI DENEEN, BENJAMIN, ZHENG, HUI · 2016 to 2016
$3.1M
NIA NIH HHS RF1 AG054111NINDS NIH HHS R01 NS071153
6 · The paper itself

Abstract

Astrocytes are the most abundant type of glial cell in the central nervous system and perform a myriad of vital functions, however, the nature of their diversity remains a longstanding question in neuroscience. Using transcription factor motif discovery analysis on region-specific gene signatures from astrocytes we uncovered universal and region-specific transcription factor expression profiles. This analysis revealed that motifs for Nuclear Factor-I (NFI) are present in genes enriched in astrocytes from all regions, with NFIB and NFIX exhibiting pan-astrocyte expression in the olfactory bulb, hippocampus, cortex, and brainstem. Further analysis into region-specific motif patterns, identified Nkx3-1, Stat4, Pgr, and Nkx6-1 as prospective region-specific transcription factors. Validation studies revealed that Nkx6-1 is exclusively expressed in astrocytes in the brainstem and associates with the promoters of several brainstem specific target genes. These studies illustrate the presence of multiple transcriptional layers in astrocytes across diverse brain regions and provide a new entry point for examining how astrocyte diversity is specified and maintained.

Indexed as

astrocytebioinformaticsbraincellular diversitytranscription factor

Identifiers

PMID32153350
PMCPMC7046629
OpenAlexW3006984592

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.