Evidence map›Paper›PMID 32152790›Full record

ArticlePlanta2020

A nucleoside diphosphate kinase gene OsNDPK4 is involved in root development and defense responses in rice (Oryza sativa L.).

Jin Ye, Wona Ding, Yujie Chen, Xinni Zhu, Jiutong Sun, Wenjuan Zheng, Botao Zhang, Shihua Zhu

Abstract read
PubMed Publisher
In one paragraph

Article in Planta, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.3field-weighted citation impact, top 47% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Functional Analysis ofPlants (Basel, Switzerland) · 2026
    Article
  3. Article
  4. The dynamin-related proteinFrontiers in plant science · 2026
    Article
  5. Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Jin YeCollege of Science and Technology, Ningbo University, Ningbo, 315211, People's Republic of China.
Wona DingCollege of Science and Technology, Ningbo University, Ningbo, 315211, People's Republic of China. dwn@zju.edu.cn.ORCID https://orcid.org/0000-0002-4222-3611
Yujie ChenCollege of Science and Technology, Ningbo University, Ningbo, 315211, People's Republic of China.
Xinni ZhuCollege of Science and Technology, Ningbo University, Ningbo, 315211, People's Republic of China.
Jiutong SunCollege of Science and Technology, Ningbo University, Ningbo, 315211, People's Republic of China.
Wenjuan ZhengCollege of Science and Technology, Ningbo University, Ningbo, 315211, People's Republic of China.
Botao ZhangCixi Institute of Biomedical Engineering, Ningbo Institute of Materials Technology and Engineering, Chinese Academy of Sciences, Ningbo, 315201, China. zhangbotao@nimte.ac.cn.ORCID http://orcid.org/0000-0003-3691-7876
Shihua ZhuCollege of Science and Technology, Ningbo University, Ningbo, 315211, People's Republic of China. zhushihua@nbu.edu.cn.ORCID https://orcid.org/0000-0002-8046-6825
Ningbo University · CNChinese Academy of Sciences · CN

Funding

National Natural Science Foundation of China 31300246National Natural Science Foundation of China 31371595Natural Science Foundation of Ningbo 2019A610413Natural Science Foundation of Zhejiang Province LY17C020002
6 · The paper itself

Abstract

MAIN

conclusionDysfunctional mutation of OsNDPK4 resulted in severe defects in root development of rice. However, the resistance of Osndpk4 against bacterial blight was significantly enhanced. Nucleoside diphosphate kinases (NDPKs) are an evolutionarily conserved family of important enzymes balancing the energy currency nucleoside triphosphates by catalyzing the transfer of their phosphate groups. The aim of this study was to elucidate the function of OsNDPK4 in rice. A dysfunctional rice mutant was employed to characterize the function of OsNDPK4. Its expression and subcellular localization were examined. The transcriptomic change in roots of Osndpk4 was analyzed by RNA-seq. The rice mutant Osndpk4 showed severe defects in root development from the early seedling stage. Further analysis revealed that meristematic activity and cell elongation were significantly inhibited in primary roots of Osndpk4, together with reduced accumulation of reactive oxygen species (ROS). Map-based cloning identified that the mutation occurred in the OsNDPK4 gene. OsNDPK4 was found to be expressed in a variety of tissues throughout the plant and OsNDPK4 was located in the cytosol. Osndpk4 showed enhanced resistance to the bacterial pathogen Xanthomonas oryzae pv. oryzae (Xoo) and up-regulation of pathogenesis-related marker genes. In addition, transcriptomic analysis showed that OsNDPK4 was significantly associated with a number of biological processes, including translation, protein modification, metabolism, biotic stress response, etc. Detailed analysis revealed that the dysfunction of OsNDPK4 might reorchestrate energy homeostasis and hormone metabolism and signalling, resulting in repression of translation, DNA replication and cell cycle progression, and priming of biotic stress defense. Our results demonstrate that OsNDPK4 plays important roles in energy homeostasis, development process, and defense responses in rice.

Indexed as

Amino Acid SequenceCloning, MolecularDisease ResistanceGene Expression ProfilingGene Expression Regulation, PlantNucleoside-Diphosphate KinaseOryzaPlant DevelopmentPlant DiseasesPlant ProteinsPlant RootsReactive Oxygen SpeciesSequence Analysis, RNAStress, PhysiologicalTranscriptomeWhole Genome SequencingNucleoside-Diphosphate KinasePlant ProteinsReactive Oxygen SpeciesDefense responsesNucleoside diphosphate kinases (NDPKs)RiceRNA-seqShort root

Identifiers

PMID32152790
OpenAlexW3009341294

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.