Evidence map›Paper›PMID 32152541›Full record

ArticleNature chemical biology2020

A bifunctional O-antigen polymerase structure reveals a new glycosyltransferase family.

Bradley R Clarke, Olga G Ovchinnikova, Ryan P Sweeney, Evelyn R Kamski-Hennekam, Russel Gitalis, Evan Mallette, Steven D Kelly, Todd L Lowary, Matthew S Kimber, Chris Whitfield

Abstract read
PubMed Publisher
In one paragraph

Article in Nature chemical biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 36 citations in OpenAlex.

  1. O-antigen polysaccharides inMicrobiology and molecular biology reviews : MMBR · 2025
    Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Identification of a second glycoform of the clinically prevalent O1 antigen fromProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  8. Identification ofApplied and environmental microbiology · 2023
    Article
  9. Article
  10. Article
  11. Host defense against the infection ofFrontiers in cellular and infection microbiology · 2022
    Review
  12. Review
  13. Article
  14. Article
  15. An ABC transporter Wzm-Wzt catalyzes translocation of lipid-linked galactan across the plasma membrane in mycobacteria.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  16. Article
  17. Article
  18. Lipopolysaccharide O-antigens-bacterial glycans made to measure.The Journal of biological chemistry · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Bradley R ClarkeDepartment of Molecular and Cellular Biology, University of Guelph, Guelph, Ontario, Canada.ORCID http://orcid.org/0000-0003-2233-1268
Olga G OvchinnikovaDepartment of Molecular and Cellular Biology, University of Guelph, Guelph, Ontario, Canada.ORCID http://orcid.org/0000-0002-0937-475X
Ryan P SweeneyDepartment of Chemistry, University of Alberta, Edmonton, Alberta, Canada.ORCID http://orcid.org/0000-0003-4022-3041
Evelyn R Kamski-HennekamDepartment of Molecular and Cellular Biology, University of Guelph, Guelph, Ontario, Canada.ORCID http://orcid.org/0000-0002-9576-7997
Russel GitalisDepartment of Molecular and Cellular Biology, University of Guelph, Guelph, Ontario, Canada.ORCID http://orcid.org/0000-0002-0429-323X
Evan MalletteDepartment of Molecular and Cellular Biology, University of Guelph, Guelph, Ontario, Canada.
Steven D KellyDepartment of Molecular and Cellular Biology, University of Guelph, Guelph, Ontario, Canada.ORCID http://orcid.org/0000-0003-1250-7055
Todd L LowaryDepartment of Chemistry, University of Alberta, Edmonton, Alberta, Canada.
Matthew S KimberDepartment of Molecular and Cellular Biology, University of Guelph, Guelph, Ontario, Canada. mkimber@uoguelph.ca.ORCID http://orcid.org/0000-0001-9454-5586
Chris WhitfieldDepartment of Molecular and Cellular Biology, University of Guelph, Guelph, Ontario, Canada. cwhitfie@uoguelph.ca.ORCID http://orcid.org/0000-0002-5267-7027
University of Guelph · CAUniversity of Alberta · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Lipopolysaccharide O-antigen is an attractive candidate for immunotherapeutic strategies targeting antibiotic-resistant Klebsiella pneumoniae. Several K. pneumoniae O-serotypes are based on a shared O2a-antigen backbone repeating unit: (→ 3)-α-Galp-(1 → 3)-β-Galf-(1 →). O2a antigen is synthesized on undecaprenol diphosphate in a pathway involving the O2a polymerase, WbbM, before its export by an ATP-binding cassette transporter. This dual domain polymerase possesses a C-terminal galactopyranosyltransferase resembling known GT8 family enzymes, and an N-terminal DUF4422 domain identified here as a galactofuranosyltransferase defining a previously unrecognized family (GT111). Functional assignment of DUF4422 explains how galactofuranose is incorporated into various polysaccharides of importance in vaccine production and the food industry. In the 2.1-Å resolution structure, three WbbM protomers associate to form a flattened triangular prism connected to a central stalk that orients the active sites toward the membrane. The biochemical, structural and topological properties of WbbM offer broader insight into the mechanisms of assembly of bacterial cell-surface glycans.

Indexed as

Amino Acid SequenceATP-Binding Cassette TransportersCell MembraneGlycosyltransferasesHexosyltransferasesKlebsiella pneumoniaeLipopolysaccharidesO AntigensPolysaccharides, BacterialATP-Binding Cassette TransportersGlycosyltransferasesHexosyltransferasesLipopolysaccharidesO-antigen polymeraseO AntigensPolysaccharides, Bacterial

Identifiers

PMID32152541
OpenAlexW3010580300

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.