Evidence map›Paper›PMID 32152007›Full record

ArticleG3 (Bethesda, Md.)2020

The UCSF Mouse Inventory Database Application, an Open Source Web App for Sharing Mutant Mice Within a Research Community.

Estelle Wall, Jonathan Scoles, Adriane Joo, Ophir Klein, Carlo Quinonez, Jeffrey O Bush, Gail R Martin, Diana J Laird

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact, top 98% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 0 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Estelle WallDepartment of Obstetrics, Gynecology and Reproductive Science; Center for Reproductive Sciences; Eli and Edythe Broad Center for Regeneration Medicine and Stem Cell Research, University of California.
Jonathan ScolesSan Francisco, CA 94143.
Adriane JooProgram in Craniofacial Biology and Department of Orofacial Sciences, Univeristy of California, San Francisco, CA 94143.
Ophir KleinDepartment of Pediatrics and Institute for Human Genetics, University of California, San Francisco, CA 94143.ORCID 0000-0002-6254-7082
Carlo QuinonezThermoFisher Scientific, Carlsbad, CA 92008.
Jeffrey O BushDepartment of Cell and Tissue Biology; Program in Craniofacial Biology; Institute for Human Genetics, University of California, San Francisco, CA 94143.ORCID 0000-0002-6053-8756
Gail R MartinDepartment of Anatomy, University of California, San Francisco, CA 94143.
Diana J LairdDepartment of Obstetrics, Gynecology and Reproductive Science; Center for Reproductive Sciences; Eli and Edythe Broad Center for Regeneration Medicine and Stem Cell Research, University of California diana.laird@ucsf.edu.ORCID 0000-0002-4930-0560
University of California, San Francisco · USReproductive Science Center · USThermo Fisher Scientific (United States) · USUniversity of San Francisco · US

Funding

Mechanisms of Eph/Ephrin signaling in craniofacial morphogenesis and craniofrontonasal syndromeR01DE023337 · NIDCR · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BUSH, JEFFREY OHMANN · 2013 to 2021
$4.3M
Phenotype-driven approach to understanding the function of craniofacial regulators using IMPC-generated mouse strainsR01DE028753 · NIDCR · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BUSH, JEFFREY OHMANN, SELLERI, LICIA · 2019 to 2023
$3.9M
Cellular mechanisms of lip and palate fusionR01DE025877 · NIDCR · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BUSH, JEFFREY OHMANN · 2016 to 2020
$2.0M
Mechanisms of early tracheal specification and morphogenesisR01HL144785 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BUSH, JEFFREY OHMANN · 2019 to 2022
$1.6M
NHLBI NIH HHS R01 HL144785NIDCR NIH HHS R01 DE023337NIDCR NIH HHS R01 DE025877NIDCR NIH HHS R01 DE028753
6 · The paper itself

Abstract

The UCSF Mouse Inventory Database Application is an open-source Web App that provides information about the mutant alleles, transgenes, and inbred strains maintained by investigators at the university and facilitates sharing of these resources within the university community. The Application is designed to promote collaboration, decrease the costs associated with obtaining genetically-modified mice, and increase access to mouse lines that are difficult to obtain. An inventory of the genetically-modified mice on campus and the investigators who maintain them is compiled from records of purchases from external sources, transfers from researchers within and outside the university, and from data provided by users. These data are verified and augmented with relevant information harvested from public databases, and stored in a succinct, searchable database secured on the university network. Here we describe this resource and provide information about how to implement and maintain such a mouse inventory database application at other institutions.

Indexed as

Mobile ApplicationsAllelesAnimalsDatabases, FactualInternetMiceTransgenesinbred strainmousemutant alleletransgeneweb application

Identifiers

PMID32152007
PMCPMC7202022
OpenAlexW3012430500

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.