Evidence map›Paper›PMID 32151332›Full record

Observational studyThe Lancet. Infectious diseases2020

Molecular and clinical epidemiology of carbapenem-resistant Enterobacterales in the USA (CRACKLE-2): a prospective cohort study.

David van Duin, Cesar A Arias, Lauren Komarow, Liang Chen, Blake M Hanson, Gregory Weston, Eric Cober, Omai B Garner, Jesse T Jacob, Michael J Satlin and 25 more

Erratum issued Registry-linked trialOpen access · greenAbstract readMulticenter StudyObservational Study
In one paragraph

Observational study in The Lancet. Infectious diseases, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. It is linked to trial NCT03646227 (Multi-Drug Resistant Organism Network - MDRO Network), which is not on this map. Cited by 224 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
224citing papers in PubMed, 1 pooled it
12.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT03646227 completednot on this map

Multi-Drug Resistant Organism Network - MDRO Network

TypeobservationalSponsorDuke UniversityRan2016 to 2020Enrolled6,496ConditionsInfections Resistant to Multiple Drugs, Bacterial InfectionsArmsStandard of Care
3 · Its place in the literature

Who cites it

224 citing papers in PubMed, 1 synthesis or guideline pooled it, 317 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Global epidemiology of carbapenem-resistantJAC-antimicrobial resistance · 2026
    Review
  6. Review
  7. CMAJ : Canadian Medical Association journal = journal de l'Association medicale canadienne · 2026
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. The genomic landscape of Klebsiella pneumoniae in Russia.World journal of microbiology & biotechnology · 2026
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Review
  20. Article

164 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

35 authors at 20 institutions in 5 countries.

David van DuinDivision of Infectious Diseases, University of North Carolina, Chapel Hill, NC, USA. Electronic address: david_vanduin@med.unc.edu.
Cesar A AriasDivision of Infectious Diseases and Center for Antimicrobial Resistance and Microbial Genomics, UTHealth, Houston, TX, USA; Center for Infectious Diseases, UTHealth, Houston, TX, USA; Molecular Genetics and Antimicrobial Resistance Unit, International Center for Microbial Genomics, Universidad El Bosque, Bogota, Colombia.
Lauren KomarowThe Biostatistics Center, The George Washington University, Rockville, MD, USA.
Liang ChenCenter for Discovery and Innovation, Hackensack Meridian Health, Nutley, NJ, USA.
Blake M HansonDivision of Infectious Diseases and Center for Antimicrobial Resistance and Microbial Genomics, UTHealth, Houston, TX, USA; Center for Infectious Diseases, UTHealth, Houston, TX, USA.
Gregory WestonDivision of Infectious Diseases, Department of Medicine, Montefiore Medical Center, Albert Einstein College of Medicine, Bronx, NY, USA.
Eric CoberDepartment of Infectious Diseases, Cleveland Clinic, Cleveland, OH, USA.
Omai B GarnerDepartment of Pathology and Laboratory Medicine, David Geffen School of Medicine at the University of California, Los Angeles, CA, USA.
Jesse T JacobDivision of Infectious Diseases, Department of Medicine, Emory University School of Medicine, Atlanta, GA, USA.
Michael J SatlinDivision of Infectious Diseases, Weill Cornell Medicine, New York-Presbyterian Hospital, New York, NY, USA.
Bettina C FriesDepartment of Medicine, Division of Infectious Diseases, Stony Brook University, Stony Brook, NY, USA.
Julia Garcia-DiazDepartment of Infectious Diseases, Ochsner Clinic Foundation, New Orleans, LA, USA.
Yohei DoiDivision of Infectious Diseases, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA; Departments of Microbiology and Infectious Diseases, Fujita Health University School of Medicine, Aichi, Japan.
Sorabh DharDivision of Infectious Diseases, Detroit Medical Center, Wayne State University, Detroit, MI, USA.
Keith S KayeDivision of Infectious Diseases, University of Michigan, Ann Arbor, MI, USA.
Michelle EarleyThe Biostatistics Center, The George Washington University, Rockville, MD, USA.
Andrea M HujerLouis Stokes Cleveland Department of Veterans Affairs Medical Center, Cleveland, OH, USA; Department of Medicine, Case Western Reserve University School of Medicine, Cleveland, OH, USA.
Kristine M HujerLouis Stokes Cleveland Department of Veterans Affairs Medical Center, Cleveland, OH, USA; Department of Medicine, Case Western Reserve University School of Medicine, Cleveland, OH, USA.
T Nicholas DomitrovicLouis Stokes Cleveland Department of Veterans Affairs Medical Center, Cleveland, OH, USA; Department of Medicine, Case Western Reserve University School of Medicine, Cleveland, OH, USA.
William C ShropshireDivision of Infectious Diseases and Center for Antimicrobial Resistance and Microbial Genomics, UTHealth, Houston, TX, USA.
An DinhDivision of Infectious Diseases and Center for Antimicrobial Resistance and Microbial Genomics, UTHealth, Houston, TX, USA.
Claudia MancaCenter for Discovery and Innovation, Hackensack Meridian Health, Nutley, NJ, USA.
Courtney L LuterbachDivision of Infectious Diseases, University of North Carolina, Chapel Hill, NC, USA.
Minggui WangInstitute of Antibiotics, Huashan Hospital, Fudan University, Shanghai, China.
David L PatersonUniversity of Queensland Centre for Clinical Research, Royal Brisbane and Women's Hospital Campus, QL, Australia.
Ritu BanerjeeDivision of Pediatric Infectious Diseases, Vanderbilt University Medical Center, Nashville, TN, USA.
Robin PatelDivision of Clinical Microbiology, Department of Laboratory Medicine and Pathology, and Division of Infectious Diseases, Department of Medicine, Mayo Clinic, Rochester, MN, USA.
Scott EvansThe Biostatistics Center, The George Washington University, Rockville, MD, USA.
Carol HillDuke Clinical Research Institute, Duke University Medical Center, Durham, NC, USA.
Rebekka AriasDuke Clinical Research Institute, Duke University Medical Center, Durham, NC, USA.
Henry F ChambersDepartment of Medicine, University of California San Francisco, San Francisco, CA, USA.
Vance G FowlerDuke Clinical Research Institute, Duke University Medical Center, Durham, NC, USA; Division of Infectious Diseases, Duke University, Durham, NC, USA.
Barry N KreiswirthCenter for Discovery and Innovation, Hackensack Meridian Health, Nutley, NJ, USA.
Robert A BonomoLouis Stokes Cleveland Department of Veterans Affairs Medical Center, Cleveland, OH, USA; Department of Medicine, Case Western Reserve University School of Medicine, Cleveland, OH, USA; Departments of Pharmacology, Molecular Biology and Microbiology, Biochemistry, and Proteomics and Bioinformatics, Case Western Reserve University School of Medicine, Cleveland, OH, USA; CWRU-Cleveland VAMC Center for Antimicrobial Resistance and Epidemiology, Cleveland, OH, USA.
Multi-Drug Resistant Organism Network Investigators
The University of Texas Health Science Center at Houston · USCenter for Discovery · USDuke Medical Center · USGeorge Washington University · USUniversity of North Carolina at Chapel Hill · USUniversity School · USCase Western Reserve University · USCleveland Clinic · USEmory University · USFudan University · CNLouis Stokes Cleveland VA Medical Center · USMayo Clinic in Arizona · USMontefiore Medical Center · USNew York Hospital Queens · USOchsner Medical Center · USRoyal Brisbane and Women's Hospital · AUStony Brook University · USUniversity of California, Los Angeles · USUniversity of California, San Francisco · USUniversity of Michigan–Ann Arbor · US

Funding

Antibacterial Resistance Leadership Group (ARLG)UM1AI104681 · NIAID · DUKE UNIVERSITY · PI Vance G. Fowler, Henry F HENRY CHAMBERS · 2013 to 2026
$180.8M
Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
The molecular basis of the epidemic blaKPC gene KlebsiellaR01AI090155 · NIAID · UNIV OF MED/DENT OF NJ-NJ MEDICAL SCHOOL · PI KREISWIRTH, BARRY NEAL · 2011 to 2021
$7.2M
Understanding B-Lactam Resistance in Acinetobacter baumanniiR01AI072219 · NIAID · CASE WESTERN RESERVE UNIVERSITY · PI ROBERT A. BONOMO, Philip N. Rather · 2007 to 2026
$6.6M
Optimizing Clinical Use of Polymyxin B: Teaching an Old Drug to Treat SuperbugsR01AI119446 · NIAID · WAYNE STATE UNIVERSITY · PI LI, JIAN, POGUE, JASON MICHAEL · 2015 to 2019
$5.0M
Understanding ceftazidime resistance in SHV B-LactamasesR01AI063517 · NIAID · CASE WESTERN RESERVE UNIVERSITY · PI BONOMO, ROBERT A. · 2005 to 2023
$4.9M
A Mechanism-Based Approach to Metallo-beta-Lactamase InhibitionR01AI100560 · NIAID · CASE WESTERN RESERVE UNIVERSITY · PI BONOMO, ROBERT A., SPENCER, JAMES · 2012 to 2022
$4.4M
Colistin-resistant Acinetobacter baumanniiR01AI104895 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI DOI, YOHEI, ERNST, ROBERT K · 2014 to 2024
$4.2M
The LiaFSR system and antimicrobial peptide resistance in enterococciR01AI134637 · NIAID · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI Cesar Augusto Arias · 2018 to 2026
$3.7M
Bacterial Characteristics of Community-associated Carbapenem-Resistant EnterobacteriaceaeR01AI143910 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI VAN DUIN, DAVID · 2019 to 2023
$1.9M
Mentoring Patient Oriented Research in Antibiotic-Resistant BacteriaK24AI093969 · NIAID · DUKE UNIVERSITY · PI FOWLER, VANCE G. · 2011 to 2020
$1.6M
POR Program on Genomic Prediction of Antimicrobial Resistance in VREK24AI121296 · NIAID · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI ARIAS, CESAR AUGUSTO · 2016 to 2025
$1.5M
BLRD VA I01 BX001974BLRD VA I01 BX003741NCATS NIH HHS UL1 TR001863NIAID NIH HHS K08 AI113317NIAID NIH HHS K24 AI093969NIAID NIH HHS K24 AI121296NIAID NIH HHS R01 AI063517NIAID NIH HHS R01 AI072219NIAID NIH HHS R01 AI090155NIAID NIH HHS R01 AI100560NIAID NIH HHS R01 AI104895NIAID NIH HHS R01 AI119446NIAID NIH HHS R01 AI134637NIAID NIH HHS R01 AI143910NIAID NIH HHS R21 AI114508NIAID NIH HHS R21 AI117338NIAID NIH HHS R21 AI123747NIAID NIH HHS R21 AI135250NIAID NIH HHS R21 AI135522NIAID NIH HHS R21 AI143229NIAID NIH HHS UM1 AI104681Wellcome Trust
6 · The paper itself

Abstract

backgroundCarbapenem-resistant Enterobacterales (CRE) are a global threat. We aimed to describe the clinical and molecular characteristics of Centers for Disease Control and Prevention (CDC)-defined CRE in the USA.

methodsCRACKLE-2 is a prospective, multicentre, cohort study. Patients hospitalised in 49 US hospitals, with clinical cultures positive for CDC-defined CRE between April 30, 2016, and Aug 31, 2017, were included. There was no age exclusion. The primary outcome was desirability of outcome ranking (DOOR) at 30 days after index culture. Clinical data and bacteria were collected, and whole genome sequencing was done. This trial is registered with ClinicalTrials.gov, number NCT03646227.

findings1040 patients with unique isolates were included, 449 (43%) with infection and 591 (57%) with colonisation. The CDC-defined CRE admission rate was 57 per 100 000 admissions (95% CI 45-71). Three subsets of CDC-defined CRE were identified: carbapenemase-producing Enterobacterales (618 [59%] of 1040), non-carbapenemase-producing Enterobacterales (194 [19%]), and unconfirmed CRE (228 [22%]; initially reported as CRE, but susceptible to carbapenems in two central laboratories). Klebsiella pneumoniae carbapenemase-producing clonal group 258 K pneumoniae was the most common carbapenemase-producing Enterobacterales. In 449 patients with CDC-defined CRE infections, DOOR outcomes were not significantly different in patients with carbapenemase-producing Enterobacterales, non-carbapenemase-producing Enterobacterales, and unconfirmed CRE. At 30 days 107 (24%, 95% CI 20-28) of these patients had died.

interpretationAmong patients with CDC-defined CRE, similar outcomes were observed among three subgroups, including the novel unconfirmed CRE group. CDC-defined CRE represent diverse bacteria, whose spread might not respond to interventions directed to carbapenemase-producing Enterobacterales.

fundingNational Institutes of Health.

Indexed as

Carbapenem-Resistant EnterobacteriaceaeAgedCohort StudiesEnterobacteriaceae InfectionsFemaleHumansMaleMiddle AgedPhylogenyProspective StudiesUnited States

Identifiers

PMID32151332
PMCPMC7473597
OpenAlexW3009858064

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.