Evidence map›Paper›PMID 32151264›Full record

ArticleBMC medical genomics2020

Transcriptome analysis of HPV-induced warts and healthy skin in humans.

Laith N Al-Eitan, Amneh H Tarkhan, Mansour A Alghamdi, Firas A Al-Qarqaz, Hadeel S Al-Kofahi

Open access · goldAbstract read
In one paragraph

Article in BMC medical genomics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 30 citations in OpenAlex.

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  5. Gene Expression Dysregulation in Whole Blood of Patients withInternational journal of molecular sciences · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Laith N Al-EitanDepartment of Applied Biological Sciences, Jordan University of Science and Technology, Irbid, 22110, Jordan. lneitan@just.edu.jo.ORCID 0000-0003-0064-0190
Amneh H TarkhanDepartment of Applied Biological Sciences, Jordan University of Science and Technology, Irbid, 22110, Jordan.
Mansour A AlghamdiDepartment of Anatomy, College of Medicine, King Khalid University, Abha, 61421, Saudi Arabia.
Firas A Al-QarqazDepartment of Internal Medicine, Jordan University of Science and Technology, Irbid, 22110, Jordan.
Hadeel S Al-KofahiDepartment of Internal Medicine, Jordan University of Science and Technology, Irbid, 22110, Jordan.
Jordan University of Science and Technology · JOKing Khalid University · SA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe human papillomaviruses (HPV) are a group of viruses that, depending on the strain, can cause cancer or the formation of benign growths known as warts. Scarce information exists with regard to the genetic nature of non-genital cutaneous warts induced by the human papillomavirus (HPV).

methodsThe main purpose of this study is to investigate the differences between the gene expression profiles of common warts and healthy skin in HPV-positive individuals by RNA sequencing on the Illumina HiSeq 2500. After obtaining shave biopsies of common warts and healthy skin from twelve Arab males, we were able to analyze the transcriptomes of 24 paired cases and controls.

resultsCommon warts were found to possess a highly significant and unique molecular signature. Many of the most up-regulated (KRT16, EPGN, and ABCG4) and down-regulated genes (C15orf59, CYB561A3, and FCGRT) in warts were the subject of little investigation in the published literature. Moreover, the top 500 differentially expressed genes were found to be associated with immune and autoimmune pathways, such as the neutrophil degranulation, toll-like receptor 7/8 (TLR 7/8) cascade, toll-like receptor 9 (TLR9) cascade, and toll-like receptor 10 (TLR10) pathways, among others.

conclusionsOur findings are particularly important because they serve as the most comprehensive to date with regard to the modulation of human skin gene expression by HPV infection.

Indexed as

AlphapapillomavirusDown-RegulationGene Expression ProfilingHigh-Throughput Nucleotide SequencingSkinUp-RegulationWartsAdultHumansMaleCutaneous wartsHPVRNA-sequencingTranscriptome

Identifiers

PMID32151264
PMCPMC7063766
OpenAlexW3012087411

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.