Evidence map›Paper›PMID 32151087›Full record

ArticleInternational journal of molecular sciences2020

Genome-Wide Detection of Key Genes and Epigenetic Markers for Chicken Fatty Liver.

Xiaodong Tan, Ranran Liu, Siyuan Xing, Yonghong Zhang, Qinghe Li, Maiqing Zheng, Guiping Zhao, Jie Wen

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.8field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 31 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 2 countries.

Xiaodong TanInstitute of Animal Sciences, Chinese Academy of Agricultural Sciences, Beijing 100193, China.
Ranran LiuInstitute of Animal Sciences, Chinese Academy of Agricultural Sciences, Beijing 100193, China.
Siyuan XingInstitute of Animal Sciences, Chinese Academy of Agricultural Sciences, Beijing 100193, China.ORCID 0000-0002-8790-6598
Yonghong ZhangInstitute of Animal Sciences, Chinese Academy of Agricultural Sciences, Beijing 100193, China.
Qinghe LiInstitute of Animal Sciences, Chinese Academy of Agricultural Sciences, Beijing 100193, China.
Maiqing ZhengInstitute of Animal Sciences, Chinese Academy of Agricultural Sciences, Beijing 100193, China.
Guiping ZhaoInstitute of Animal Sciences, Chinese Academy of Agricultural Sciences, Beijing 100193, China.
Jie WenInstitute of Animal Sciences, Chinese Academy of Agricultural Sciences, Beijing 100193, China.
Chinese Academy of Agricultural Sciences · CN

Funding

Agricultural Science and Technology Innovation Program ASTIP-IAS04Agricultural Science and Technology Innovation Program ASTIP-IAS-TS-15Project of State Key Laboratory of Animal Nutrition 2004DA125184G1607the Modern Agro-industry Technology Research System CARS-41the National Key Research and Development Program of China No. 2018YFD0500401
6 · The paper itself

Abstract

Chickens are one of the most important sources of meat worldwide, and the occurrence of fatty liver syndrome (FLS) is closely related to production efficiency. However, the potential mechanism of FLS remains poorly understood. An integrated analysis of data from whole-genome bisulfite sequencing and long noncoding RNA (lncRNA) sequencing was conducted. A total of 1177 differentially expressed genes (DEGs) and 1442 differentially methylated genes (DMGs) were found. There were 72% of 83 lipid- and glucose-related genes upregulated; 81% of 150 immune-related genes were downregulated in fatty livers. Part of those genes was within differentially methylated regions (DMRs). Besides, sixty-seven lncRNAs were identified differentially expressed and divided into 13 clusters based on their expression pattern. Some lipid- and glucose-related lncRNAs (e.g., LNC_006756, LNC_012355, and LNC_005024) and immune-related lncRNAs (e.g., LNC_010111, LNC_010862, and LNC_001272) were found through a co-expression network and functional annotation. From the expression and epigenetic profiles, 23 target genes (e.g.,

Indexed as

Epigenesis, GeneticGenomeTranscriptomeAnimalsBiomarkersChickensFatty LiverGene Expression ProfilingRNA, Long NoncodingRNA, MessengerBiomarkersRNA, Long NoncodingRNA, MessengerchickenDNA methylationepigeneticsfatty liverlipid metabolismlong noncoding RNA

Identifiers

PMID32151087
PMCPMC7084419
OpenAlexW3010107025

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.