Evidence map›Paper›PMID 32150565›Full record

ArticlePLoS neglected tropical diseases2020

Single cell immune profiling of dengue virus patients reveals intact immune responses to Zika virus with enrichment of innate immune signatures.

Yujiao Zhao, Matthew Amodio, Brent Vander Wyk, Bram Gerritsen, Mahesh M Kumar, David van Dijk, Kevin Moon, Xiaomei Wang, Anna Malawista, Monique M Richards and 10 more

Open access · goldAbstract read
In one paragraph

Article in PLoS neglected tropical diseases, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 22 citations in OpenAlex.

  1. Trial
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  5. Article
  6. Article
  7. Geometry Regularized Autoencoders.IEEE transactions on pattern analysis and machine intelligence · 2023
    Article
  8. Article
  9. Cytometry profiling ofFrontiers in immunology · 2023
    Article
  10. Article
  11. Article
  12. Article
  13. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 3 institutions in 2 countries.

Yujiao ZhaoDepartment of Internal Medicine, Yale School of Medicine, New Haven, Connecticut, Untied States of America.
Matthew AmodioDepartment of Genetics, Yale School of Medicine, New Haven, Connecticut, United States of America.
Brent Vander WykDepartment of Internal Medicine, Yale School of Medicine, New Haven, Connecticut, Untied States of America.
Bram GerritsenDepartment of Pathology, Yale School of Medicine, New Haven, Connecticut, United States of America.ORCID 0000-0001-7065-3160
Mahesh M KumarProgram in Human Translational Immunology, Yale School of Medicine, New Haven, Connecticut, United States of America.
David van DijkDepartment of Genetics, Yale School of Medicine, New Haven, Connecticut, United States of America.
Kevin MoonDepartment of Genetics, Yale School of Medicine, New Haven, Connecticut, United States of America.
Xiaomei WangDepartment of Internal Medicine, Yale School of Medicine, New Haven, Connecticut, Untied States of America.
Anna MalawistaDepartment of Internal Medicine, Yale School of Medicine, New Haven, Connecticut, Untied States of America.
Monique M RichardsDepartment of Internal Medicine, Yale School of Medicine, New Haven, Connecticut, Untied States of America.
Megan E CahillDepartment of Internal Medicine, Yale School of Medicine, New Haven, Connecticut, Untied States of America.
Anita DesaiDepartment of Neurovirology, The National Institute of Mental Health and NeuroSciences (NIMHANS), Bangalore, India.
Jayasree SivadasanApollo Hospital, Bangalore, India.
Manjunatha M VenkataswamyDepartment of Neurovirology, The National Institute of Mental Health and NeuroSciences (NIMHANS), Bangalore, India.
Vasanthapuram RaviDepartment of Neurovirology, The National Institute of Mental Health and NeuroSciences (NIMHANS), Bangalore, India.
Erol FikrigDepartment of Internal Medicine, Yale School of Medicine, New Haven, Connecticut, Untied States of America.
Priti KumarDepartment of Internal Medicine, Yale School of Medicine, New Haven, Connecticut, Untied States of America.
Steven H KleinsteinDepartment of Pathology, Yale School of Medicine, New Haven, Connecticut, United States of America.
Smita KrishnaswamyDepartment of Genetics, Yale School of Medicine, New Haven, Connecticut, United States of America.
Ruth R MontgomeryDepartment of Internal Medicine, Yale School of Medicine, New Haven, Connecticut, Untied States of America.ORCID 0000-0002-8661-4454
Yale University · USNational Institute of Mental Health and Neurosciences · INApollo Hospitals · IN

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
Systems investigation of vaccine responses in B cell depleted autoimmune patientsU19AI089992 · NIAID · YALE UNIVERSITY · PI David A. Hafler, RUTH R MONTGOMERY · 2010 to 2026
$50.4M
Yale Study Support Suite (YES3): Dashboard and Web Portal Software Supporting Research Workflow through integrated, customizable REDCap External ModulesP30AG021342 · NIA · YALE UNIVERSITY · PI Albert C Shaw · 2002 to 2026
$37.9M
Predoctoral Training Program in VirologyT32AI055403 · NIAID · YALE UNIVERSITY · PI KUMAR, PRITI, MOTHES, WALTHER H · 2003 to 2024
$3.6M
The role of NLRP6 and DHX15 in control of infection by RNA virusesR01AI127865 · NIAID · YALE UNIVERSITY · PI FIKRIG, EROL, FLAVELL, RICHARD A · 2018 to 2022
$2.1M
Research Training in Disability &Disabling DisordersK24AG021507 · NIA · YALE UNIVERSITY · PI GILL, THOMAS MICHAEL · 2003 to 2012
$1.6M
Howard Hughes Medical InstituteNCATS NIH HHS UL1 TR001863NIAID NIH HHS R01 AI127865NIAID NIH HHS T32 AI055403NIAID NIH HHS U19 AI089992NIA NIH HHS K24 AG021507NIA NIH HHS P30 AG021342
6 · The paper itself

Abstract

The genus Flavivirus contains many mosquito-borne human pathogens of global epidemiological importance such as dengue virus, West Nile virus, and Zika virus, which has recently emerged at epidemic levels. Infections with these viruses result in divergent clinical outcomes ranging from asymptomatic to fatal. Myriad factors influence infection severity including exposure, immune status and pathogen/host genetics. Furthermore, pre-existing infection may skew immune pathways or divert immune resources. We profiled immune cells from dengue virus-infected individuals by multiparameter mass cytometry (CyTOF) to define functional status. Elevations in IFNβ were noted in acute patients across the majority of cell types and were statistically elevated in 31 of 36 cell subsets. We quantified response to in vitro (re)infection with dengue or Zika viruses and detected a striking pattern of upregulation of responses to Zika infection by innate cell types which was not noted in response to dengue virus. Significance was discovered by statistical analysis as well as a neural network-based clustering approach which identified unusual cell subsets overlooked by conventional manual gating. Of public health importance, patient cells showed significant enrichment of innate cell responses to Zika virus indicating an intact and robust anti-Zika response despite the concurrent dengue infection.

Indexed as

Immunity, CellularImmunity, InnateAdolescentAdultDengueFemaleFlow CytometryHigh-Throughput Screening AssaysHumansMaleMiddle AgedYoung AdultZika Virus Infection

Identifiers

PMID32150565
PMCPMC7082063
OpenAlexW3009887262

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.