Evidence map›Paper›PMID 32150344›Full record

ArticleCurrent protocols in molecular biology2020

Somatic Liver Knockout (SLiK): A Quick and Efficient Way to Generate Liver-Specific Knockout Mice Using Multiplex CRISPR/Cas9 Gene Editing.

Collin G Johnson, Tong Chen, Nika Furey, Madeline G Hemmingsen, Karl-Dimiter Bissig

Open access · greenAbstract read
In one paragraph

Article in Current protocols in molecular biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.1field-weighted citation impact, top 57% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 4 citations in OpenAlex.

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  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Collin G JohnsonCenter for Cell and Gene Therapy, Stem Cells and Regenerative Medicine Center, Baylor College of Medicine, Houston, Texas.
Tong ChenDepartment of Molecular Virology & Microbiology, Baylor College of Medicine, Houston, Texas.
Nika FureyDepartment of Molecular & Cellular Biology, Baylor College of Medicine, Houston, Texas.
Madeline G HemmingsenCenter for Cell and Gene Therapy, Stem Cells and Regenerative Medicine Center, Baylor College of Medicine, Houston, Texas.
Karl-Dimiter BissigCenter for Cell and Gene Therapy, Stem Cells and Regenerative Medicine Center, Baylor College of Medicine, Houston, Texas.
Baylor College of Medicine · USDuke University · USDuke Medical Center · US

Funding

Women's Cancer Research ProgramP30CA014236 · NCI · DUKE UNIVERSITY · PI JOHN N. NORTON · 1985 to 2026
$174.8M
Genetic Repair of Familial HypercholesterolemiaR01HL132840 · NHLBI · BAYLOR COLLEGE OF MEDICINE · PI LAGOR, WILLIAM RAYMOND · 2017 to 2025
$5.4M
Training Program in Translational Biology and Molecular MedicineT32GM088129 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI ROONEY, CLIONA M., VAN DEN VEYVER, IGNATIA B · 2010 to 2019
$3.0M
Therapeutic potential of CRISPR/Cas9 genome engineering in humanized mouse modelsR01HL134510 · NHLBI · DUKE UNIVERSITY · PI BISSIG, KARL-DIMITER · 2016 to 2020
$3.0M
Therapeutic pathway reprogramming for metabolic liver diseaseR01DK115461 · NIDDK · DUKE UNIVERSITY · PI BISSIG, KARL-DIMITER · 2018 to 2020
$1.1M
Therapeutic pathway reprogramming for metabolic liver diseaseR56DK115461 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI BISSIG, KARL-DIMITER · 2017 to 2017
$238k
NCI NIH HHS P30 CA014236NHLBI NIH HHS R01 HL132840NHLBI NIH HHS R01 HL134510NIDDK NIH HHS R01 DK115461NIDDK NIH HHS R56 DK115461NIGMS NIH HHS T32 GM088129
6 · The paper itself

Abstract

Somatic liver knockout (SLiK) is a method developed to rapidly generate a liver-specific knockout of one or several genes. This technique combines the strengths of CRISPR/Cas9 gene editing and hydrodynamic tail-vein injection, a simple in vivo method for transfection of hepatocytes, to harness the powerful selection pressure of tyrosinemic livers to replace host hepatocytes with any desired gene deletion. In this protocol, we will describe sgRNA design and cloning, hydrodynamic tail-vein injection of targeting constructs, and screening and validation methods for efficient in vivo gene editing. © 2020 by John Wiley & Sons, Inc. Support Protocol 1: sgRNA design Support Protocol 2: sgRNA construction: daisy chaining multiple sgRNAs Basic Protocol: Delivery of DNA by hydrodynamic tail-vein injection and liver repopulation of edited hepatocytes Support Protocol 3: Validation of CRISPR/Cas9 cutting in vivo.

Indexed as

CRISPR-Cas SystemsAnimalsClustered Regularly Interspaced Short Palindromic RepeatsGene EditingHepatocytesLiverMiceMice, KnockoutRNA, Guide, CRISPR-Cas SystemsTransfectionRNA, Guide, CRISPR-Cas Systemsanimal modelCRISPRgenome engineeringsomatic liver knockout

Identifiers

PMID32150344
PMCPMC7500866
OpenAlexW3012081367

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.