Evidence map›Paper›PMID 32149490›Full record

ArticleACS chemical biology2020

Covalent-Fragment Screening of BRD4 Identifies a Ligandable Site Orthogonal to the Acetyl-Lysine Binding Sites.

Michael D Olp, Daniel J Sprague, Christopher J Goetz, Stefan G Kathman, Sarah L Wynia-Smith, Shifali Shishodia, Steven B Summers, Ziyang Xu, Alexander V Statsyuk, Brian C Smith

Open access · greenAbstract read
In one paragraph

Article in ACS chemical biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 39 citations in OpenAlex.

  1. Article
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  6. Zinc-chelating BET bromodomain inhibitors equally target islet endocrine cell types.American journal of physiology. Regulatory, integrative and comparative physiology · 2024
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  19. 10 years into the resurgence of covalent drugs.Future medicinal chemistry · 2021
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Michael D OlpDepartment of Biochemistry, Medical College of Wisconsin, Milwaukee, Wisconsin 53226, United States.
Daniel J SpragueDepartment of Biochemistry, Medical College of Wisconsin, Milwaukee, Wisconsin 53226, United States.
Christopher J GoetzDepartment of Biochemistry, Medical College of Wisconsin, Milwaukee, Wisconsin 53226, United States.
Stefan G KathmanDepartment of Chemistry, Northwestern University, Evanston, Illinois 60208, United States.
Sarah L Wynia-SmithDepartment of Biochemistry, Medical College of Wisconsin, Milwaukee, Wisconsin 53226, United States.
Shifali ShishodiaDepartment of Biochemistry, Medical College of Wisconsin, Milwaukee, Wisconsin 53226, United States.
Steven B SummersDepartment of Biochemistry, Medical College of Wisconsin, Milwaukee, Wisconsin 53226, United States.
Ziyang XuDepartment of Chemistry, Northwestern University, Evanston, Illinois 60208, United States.ORCID 0000-0001-7690-7029
Alexander V StatsyukDepartment of Chemistry, Northwestern University, Evanston, Illinois 60208, United States.ORCID 0000-0001-9954-8049
Brian C SmithDepartment of Biochemistry, Medical College of Wisconsin, Milwaukee, Wisconsin 53226, United States.ORCID 0000-0001-6330-2768
Medical College of Wisconsin · USNorthwestern University · US

Funding

Medical Scientist Training ProgramT32GM080202 · NIGMS · MEDICAL COLLEGE OF WISCONSIN · PI BARBIERI, JOSEPH T, SALZMAN, NITA H · 2010 to 2024
$5.7M
Biochemical mechanisms of beta cell protection through bromodomain inhibitionR01DK119359 · NIDDK · MEDICAL COLLEGE OF WISCONSIN · PI Brian Christopher Smith · 2018 to 2026
$3.1M
Chemistry of Life Processes Predoctoral Training ProgramT32GM105538 · NIGMS · NORTHWESTERN UNIVERSITY · PI KELLEHER, NEIL L · 2013 to 2022
$2.7M
Discovering and Exploiting Selectivity within Tandem BromodomainsR35GM128840 · NIGMS · MEDICAL COLLEGE OF WISCONSIN · PI Brian Christopher Smith · 2018 to 2026
$2.7M
Pharmacological Inhibitors of Nedd4 ubiquitin ligase as anticancer therapeuticsR01GM115632 · NIGMS · UNIVERSITY OF HOUSTON · PI STATSYUK, ALEXANDER V · 2015 to 2019
$1.5M
American Heart Association-American Stroke Association 15SDG25830057NIDDK NIH HHS R01 DK119359NIGMS NIH HHS R01 GM115632NIGMS NIH HHS R35 GM128840NIGMS NIH HHS T32 GM080202NIGMS NIH HHS T32 GM105538
6 · The paper itself

Abstract

BRD4, a member of the bromodomain and extraterminal domain (BET) family, has emerged as a promising epigenetic target in cancer and inflammatory disorders. All reported BET family ligands bind within the bromodomain acetyl-lysine binding sites and competitively inhibit BET protein interaction with acetylated chromatin. Alternative chemical probes that act orthogonally to the highly conserved acetyl-lysine binding sites may exhibit selectivity within the BET family and avoid recently reported toxicity in clinical trials of BET bromodomain inhibitors. Here, we report the first identification of a ligandable site on a bromodomain outside the acetyl-lysine binding site. Inspired by our computational prediction of hotspots adjacent to nonhomologous cysteine residues within the

Indexed as

AlkylationAmino Acid SequenceBinding SitesBromodomain Containing ProteinsCell Cycle ProteinsCysteineHEK293 CellsHumansK562 CellsMolecular Docking SimulationProtein BindingProtein DomainsSequence AlignmentSmall Molecule LibrariesTranscription FactorsBRD4 protein, humanBromodomain Containing ProteinsCell Cycle ProteinsCysteineSmall Molecule LibrariesTranscription Factors

Identifiers

PMID32149490
PMCPMC7271629
OpenAlexW3012115199

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.