Evidence map›Paper›PMID 32148609›Full record

ArticleJournal of microbiology & biology education2020

Facilitating Growth through Frustration: Using Genomics Research in a Course-Based Undergraduate Research Experience.

David Lopatto, Anne G Rosenwald, Justin R DiAngelo, Amy T Hark, Matthew Skerritt, Matthew Wawersik, Anna K Allen, Consuelo Alvarez, Sara Anderson, Cindy Arrigo and 93 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Journal of microbiology & biology education, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Article
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  7. Article
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  11. Article
  12. Student Attitudes Contribute to the Effectiveness of a Genomics CURE.Journal of microbiology & biology education · 2022
    Article
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  14. Manual annotation ofF1000Research · 2022
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  16. Antiracist Opportunities in theJournal of microbiology & biology education · 2021
    Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

103 authors.

David LopattoCenter for Teaching, Learning and Assessment, Grinnell College, Grinnell, IA 50112, USA.
Anne G RosenwaldBiology, Georgetown University, Washington, DC 20057, USA.
Justin R DiAngeloDivision of Science, Penn State Berks, Reading, PA 19610, USA.
Amy T HarkBiology, Muhlenberg College, Allentown, PA 18104, USA.
Matthew SkerrittScience, SUNY Corning Community College, Corning, NY 14830, USA.
Matthew WawersikBiology, College of William and Mary, Williamsburg, VA 23187, USA.
Anna K AllenBiology, Howard University, Washington, DC 20059, USA.
Consuelo AlvarezBiology, Longwood University, Farmville, VA 23909, USA.
Sara AndersonBiosciences, Minnesota State University Moorhead, Moorhead, MN 56563, USA.
Cindy ArrigoBiology, New Jersey City University, Jersey City, NJ 07305, USA.
Andrew ArshamBiology, Bemidji State University, Bemidji, MN 56601, USA.
Daron BarnardBiology, Worcester State University, Worcester, MA 01602, USA.
Christopher BazinetBiological Sciences, St. John's University, Queens, NY 11439, USA.
James E J BedardBiology, University of the Fraser Valley, Abbotsford, BC, V2S 7M8, Canada.
Indrani BoseBiology, Western Carolina University, Cullowhee, NC 28723, USA.
John M BravermanBiology, Saint Joseph's University, Philadelphia, PA 19131, USA.
Martin G BurgBiomedical Sciences and Cell & Molecular Biology, Grand Valley State University, Allendale, MI 49401, USA.
Rebecca C BurgessBiological Sciences, Stevenson University, Owings Mills, MD 21117, USA.
Paula CroonquistBiology, Anoka-Ramsey Community College, Coon Rapids, MN 55433, USA.
Chunguang DuBiology, Montclair State University, Montclair, NJ 07043, USA.
Sondra DubowskyBiology, McLennan Community College, Waco, TX 76708, USA.
Heather EislerBiology, University of the Cumberlands, Williamsburg, KY 40769, USA.
Matthew A EscobarBiological Sciences, California State University San Marcos, CA 92096, USA.
Michael FoulkBiology, Mercyhurst University, Erie, PA 16546, USA.
Emily FurbeeBiology, Washington and Jefferson College, Washington, PA 15301, USA.
Thomas GiarlaBiology, Siena College, Loudonville, NY 12211, USA.
Rivka L GlaserBiological Sciences, Stevenson University, Owings Mills, MD 21117, USA.
Anya L GoodmanChemistry and Biochemistry, California Polytechnic State University, San Luis Obispo, CA 93407, USA.
Yuying GosserStudent Research and Scholarship, City College CUNY, New York, NY 10031, USA.
Adam HabermanBiology, University of San Diego, San Diego, CA 92110, USA.
Charles HauserBiology, St. Edward's University, Austin, TX 78704, USA.
Shan HaysBiology, Western Colorado University, Gunnison, CO 81231, USA.
Carina E HowellBiological Sciences, Lock Haven University, Lock Haven, PA 17745, USA.
Jennifer JemcBiology, Loyola University Chicago, Chicago, IL 60660, USA.
M Logan JohnsonBiology, Notre Dame College, South Euclid, OH 44121, USA.
Christopher J JonesBiological Sciences, Moravian College, Bethlehem, PA 18018, USA.
Lisa KadlecBiology, Wilkes University, Wilkes-Barre, PA 18766, USA.
Jacob D KageyBiology, University of Detroit Mercy, Detroit, MI 48221, USA.
Kimberly L KellerBiology, William Woods University, Fulton, MO 65251, USA.
Jennifer KennellBiology, Vassar College, Poughkeepsie, NY 12604, USA.
S Catherine Silver KeyBiological and Biomedical Sciences, North Carolina Central University, Durham, NC 27707, USA.
Adam J KleinschmitNatural and Applied Science, University of Dubuque, Dubuque, IA 52001, USA.
Melissa KleinschmitNatural and Applied Science, University of Dubuque, Dubuque, IA 52001, USA.
Nighat P KokanNatural Sciences, Cardinal Stritch University, Milwaukee, WI 53217, USA.
Olga Ruiz KoppBiology, Utah Valley University, Orem, UT 84058, USA.
Meg M LaaksoBiology, Eastern University, St. Davids, PA 19087, USA.
Judith LeathermanBiological Sciences, University of Northern Colorado, Greeley, CO 80639, USA.
Lindsey J LongBiology, Oklahoma Christian University, Oklahoma City, OK 73136, USA.
Mollie ManierBiological Sciences, George Washington University, Washington, DC 20052, USA.
Juan C Martinez-CruzadoBiología, University of Puerto Rico at Mayagüez, Mayagüez, PR 00680, USA.
Luis F MatosBiology, Eastern Washington University, Cheney, WA 99004, USA.
Amie Jo McClellanScience and Mathematics, Bennington College, Bennington, VT 05201, USA.
Gerard McNeilBiology, York College / CUNY, Jamaica, NY 11451, USA.
Evan MerkhoferNatural Sciences, Mount Saint Mary College, Newbergh, NY 12550, USA.
Vida MingoBiology, Columbia College, Columbia, SC 29203, USA.
Hemlata MistryBiology and Biochemistry, Widener University, Chester, PA 19013, USA.
Elizabeth MitchellBiology, McLennan Community College, Waco, TX 76708, USA.
Nathan T MortimerBiological Sciences, Illinois State University, Normal, IL 61790, USA.
Debaditya MukhopadhyayMolecular Biology, Biochemistry, and Bioinformatics, Towson University, Towson, MD 21252, USA.
Jennifer Leigh MykaBiology, Gateway Community and Technical College, Florence, KY 41042, USA.
Alexis NagengastChemistry and Biochemistry, Widener University, Chester, PA 19013, USA.
Paul OvervoordeBiology, Macalester College, St. Paul, MN 55105, USA.
Don PaetkauBiology, Saint Mary's College, Notre Dame, IN 46556, USA.
Leocadia PaliulisBiology, Bucknell University, Lewisburg, PA 17837, USA.
Susan ParrishBiology, McDaniel College, Westminster, MD 21157, USA.
Mary Lai PreussBiological Sciences, Webster University, St. Louis, MO 63119, USA.
James V PriceBiology, Utah Valley University, Orem, UT 84058, USA.
Nicholas A PullenBiological Sciences, University of Northern Colorado, Greeley, CO 80639, USA.
Catherine ReinkeBiology, Linfield College, McMinnville, OR 97128, USA.
Dennis RevieBiology, California Lutheran University, Thousand Oaks, CA 91360, USA.
Srebrenka RobicBiology, Agnes Scott College, Decatur, GA 30030, USA.
Jennifer A Roecklein-CanfieldChemistry, Simmons College, Boston, MA 02115, USA.
Michael R RubinBiology, University of Puerto Rico at Cayey, Cayey, PR 00736, USA.
Takrima SadikotBiology, Washburn University, Topeka, KS 66621, USA.
Jamie Siders SanfordBiology, Ohio Northern University, Ada, OH 45810, USA.
Maria SantistebanBiology, University of North Carolina at Pembroke, Pembroke, NC 28372, USA.
Kenneth SavilleBiology, Albion College, Albion, MI 49224, USA.
Stephanie SchroederBiological Sciences, Webster University, St. Louis, MO 63119, USA.
Christopher D ShafferBiology, Washington University in St. Louis, St. Louis, MO 63130, USA.
Karim A SharifBiology, Massasoit Community College, Brockton, MA 02302, USA.
Diane E SklenskyBiology, Lane College, Jackson, TN 38301, USA.
Chiyedza SmallBiology, Medgar Evers College, CUNY, Brooklyn, NY 11225, USA.
Mary SmithBiology, North Carolina A & T State University, Greensboro, NC 27411, USA.
Sheryl SmithBiology, Arcadia, University, Glenside, PA 19038, USA.
Rebecca SpokonyNatural Sciences, Baruch College, CUNY, New York, NY 10010, USA.
Aparna SreenivasanBiology, School of Natural Sciences, California State University, Monterey Bay, Seaside, CA 93950, USA.
Joyce StammBiology, University of Evansville, Evansville, IN 47722, USA.
Rachel Sterne-MarrBiology, Siena College, Loudonville, NY 12211, USA.
Katherine C TeeterBiology, Northern Michigan University, Marquette, MI 49855, USA.
Justin ThackerayBiology, Clark University, Worcester, MA 01610, USA.
Jeffrey S ThompsonBiology, Denison University, Granville, OH 43023, USA.
Stephanie Toering PetersBiology, Wartburg College, Waverly, IA 50677, USA.
Melanie Van StryBiology, Lane College, Jackson, TN 38301, USA.
Norma Velazquez-UlloaBiology, Lewis & Clark College, Portland, OR 97219, USA.
Cindy WolfeBiology, Kentucky Wesleyan College, Owensboro, KY 42301, USA.
James YoungblomBiological Sciences, California State University Stanislaus, Turlock, CA 95382, USA.
Brian YowlerBiology, Grove City College, Grove City, PA 16127, USA.
Leming ZhouHealth Information Management, University of Pittsburgh, Pittsburgh, PA 15213, USA.
Janie BrennanEnergy, Environmental and Chemical Engineering, Washington University in St. Louis, St. Louis, MO 63130, USA.
Jeremy BuhlerComputer Science and Engineering, Washington University in St. Louis, St. Louis, MO 63130, USA.
Wilson LeungBiology, Washington University in St. Louis, St. Louis, MO 63130, USA.
Laura K ReedBiological Sciences, University of Alabama Tuscaloosa, AL 35487, USA.
Sarah C R ElginBiology, Washington University in St. Louis, St. Louis, MO 63130, USA.

Funding

Mentoring CoreP20GM103418 · NIGMS · UNIVERSITY OF KANSAS MEDICAL CENTER · PI Douglas E Wright · 2012 to 2026
$63.0M
Expanding the Genomics Education Partnership: Regional Mentoring and Training Networks to Diversify Bioinformatics Education and ResearchR25GM130517 · NIGMS · UNIVERSITY OF ALABAMA IN TUSCALOOSA · PI CHALKER, DOUGLAS LEE, REED, LAURA K · 2019 to 2023
$1.9M
NIGMS NIH HHS P20 GM103418NIGMS NIH HHS R25 GM130517
6 · The paper itself

Abstract

A hallmark of the research experience is encountering difficulty and working through those challenges to achieve success. This ability is essential to being a successful scientist, but replicating such challenges in a teaching setting can be difficult. The Genomics Education Partnership (GEP) is a consortium of faculty who engage their students in a genomics Course-Based Undergraduate Research Experience (CURE). Students participate in genome annotation, generating gene models using multiple lines of experimental evidence. Our observations suggested that the students' learning experience is continuous and recursive, frequently beginning with frustration but eventually leading to success as they come up with defendable gene models. In order to explore our "formative frustration" hypothesis, we gathered data from faculty via a survey, and from students via both a general survey and a set of student focus groups. Upon analyzing these data, we found that all three datasets mentioned frustration and struggle, as well as learning and better understanding of the scientific process. Bioinformatics projects are particularly well suited to the process of iteration and refinement because iterations can be performed quickly and are inexpensive in both time and money. Based on these findings, we suggest that a dynamic of "formative frustration" is an important aspect for a successful CURE.

Identifiers

PMID32148609
PMCPMC7048401

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.