Evidence map›Paper›PMID 32144311›Full record

ArticleScientific reports2020

Transcriptomic and computational analysis identified LPA metabolism, KLHL14 and KCNE3 as novel regulators of Epithelial-Mesenchymal Transition.

V Di Lollo, A Canciello, M Orsini, N Bernabò, M Ancora, M Di Federico, V Curini, M Mattioli, V Russo, A Mauro and 2 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.8field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 18 citations in OpenAlex.

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  9. Frontiers in cell and developmental biology · 2022
    Review
  10. Article
  11. In Vitro Innovation of Tendon Tissue Engineering Strategies.International journal of molecular sciences · 2020
    Review
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

V Di Lollo *Faculty of Bioscience and Technology for Food, Agriculture and Environment, University of Teramo, Teramo, Italy. v.dilollo@izs.it.
A Canciello *Faculty of Bioscience and Technology for Food, Agriculture and Environment, University of Teramo, Teramo, Italy. acanciello@unite.it.ORCID http://orcid.org/0000-0001-8332-7401
M OrsiniMolecular biology and genomic Unit, Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise "G. Caporale", Teramo, Italy.
N BernabòFaculty of Bioscience and Technology for Food, Agriculture and Environment, University of Teramo, Teramo, Italy.ORCID http://orcid.org/0000-0001-5140-9656
M AncoraMolecular biology and genomic Unit, Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise "G. Caporale", Teramo, Italy.
M Di FedericoMolecular biology and genomic Unit, Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise "G. Caporale", Teramo, Italy.
V CuriniMolecular biology and genomic Unit, Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise "G. Caporale", Teramo, Italy.
M MattioliFaculty of Bioscience and Technology for Food, Agriculture and Environment, University of Teramo, Teramo, Italy.
V RussoFaculty of Bioscience and Technology for Food, Agriculture and Environment, University of Teramo, Teramo, Italy.
A MauroFaculty of Bioscience and Technology for Food, Agriculture and Environment, University of Teramo, Teramo, Italy.
C CammàMolecular biology and genomic Unit, Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise "G. Caporale", Teramo, Italy.
B BarboniFaculty of Bioscience and Technology for Food, Agriculture and Environment, University of Teramo, Teramo, Italy.ORCID http://orcid.org/0000-0003-0231-8066
University of Teramo · ITIstituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise G. Caporale · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Epithelial-mesenchymal transition (EMT) is a complex biological program between physiology and pathology. Here, amniotic epithelial cells (AEC) were used as in vitro model of transiently inducible EMT in order to evaluate the transcriptional insights underlying this process. Therefore, RNA-seq was used to identify the differentially expressed genes and enrichment analyses were carried out to assess the intracellular pathways involved. As a result, molecules exclusively expressed in AEC that experienced EMT (GSTA1-1 and GSTM3) or when this process is inhibited (KLHL14 and KCNE3) were identified. Lastly, the network theory was used to obtain a computational model able to recognize putative controller genes involved in the induction and in the prevention of EMT. The results suggested an opposite role of lysophosphatidic acid (LPA) synthesis and degradation enzymes in the regulation of EMT process. In conclusion, these molecules may represent novel EMT regulators and also targets for developing new therapeutic strategies.

Indexed as

Computational BiologyComputer SimulationEpistasis, GeneticEpithelial-Mesenchymal TransitionGlutathione TransferaseHumansIntracellular Signaling Peptides and ProteinsLysophospholipidsPotassium Channels, Voltage-GatedReal-Time Polymerase Chain ReactionRNA-SeqTranscriptomeGlutathione TransferaseGSTA1 protein, humanGSTM3 protein, humanIntracellular Signaling Peptides and ProteinsKCNE3 protein, humanKLHL14 protein, humanlysophosphatidic acidLysophospholipidsPotassium Channels, Voltage-Gated

Identifiers

PMID32144311
PMCPMC7060278
OpenAlexW3010471120

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.