Evidence map›Paper›PMID 32144300›Full record

ArticleScientific reports2020

Comparative analysis of HER2 copy number between plasma and tissue samples in gastric cancer using droplet digital PCR.

Boram Kim, Soo Kyung Nam, Soo Hyun Seo, Kyoung Un Park, Sang-Hoon Ahn, Do Joong Park, Hyung-Ho Kim, Woo Ho Kim, Hye Seung Lee

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.6field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 19 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 3 countries.

Boram KimDepartment of Laboratory Medicine, Seoul National University College of Medicine, Seoul, 03080, Republic of Korea.ORCID http://orcid.org/0000-0001-5695-8902
Soo Kyung NamDepartment of Pathology, Seoul National University Bundang Hospital, Seongnam, 13620, Republic of Korea.
Soo Hyun SeoDepartment of Laboratory Medicine, Seoul National University College of Medicine, Seoul, 03080, Republic of Korea.
Kyoung Un ParkDepartment of Laboratory Medicine, Seoul National University College of Medicine, Seoul, 03080, Republic of Korea.
Sang-Hoon AhnDepartment of Surgery, Seoul National University College of Medicine, Seoul, 03080, Republic of Korea.
Do Joong ParkDepartment of Surgery, Seoul National University College of Medicine, Seoul, 03080, Republic of Korea.
Hyung-Ho KimDepartment of Surgery, Seoul National University College of Medicine, Seoul, 03080, Republic of Korea.
Woo Ho KimDepartment of Pathology, Seoul National University College of Medicine, Seoul, 03080, Republic of Korea.ORCID http://orcid.org/0000-0003-0557-1016
Hye Seung LeeDepartment of Pathology, Seoul National University Bundang Hospital, Seongnam, 13620, Republic of Korea. hye2@snu.ac.kr.ORCID http://orcid.org/0000-0002-1667-7986
Seoul National University · KRSeoul National University Bundang Hospital · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In this study, we measured the human epidermal growth factor receptor 2 (HER2) copy number in both tissue and plasma samples of gastric cancer patients by using droplet digital polymerase chain reaction (ddPCR) method. Eighty gastric cancer patients were enrolled and both formalin-fixed and paraffin-embedded tissue and preoperative plasma samples were collected. HER2 status was determined by HER2 immunohistochemistry (IHC)/silver in situ hybridization (SISH) in tissue samples and ddPCR of the target gene HER2 and the reference gene eukaryotic translation initiation factor 2C, 1 in both tissue and plasma. The concordance rate of tissue HER2 status determined by IHC/SISH and HER2 ddPCR was 90.0% (72/80), and the sensitivity and specificity of tissue ddPCR were 85.0% and 95.0%, respectively. The concordance rate of plasma ddPCR and IHC/SISH was 63.8% (51/80). The sensitivity, specificity, positive predictive value, and negative predictive value of plasma HER2 ddPCR were 37.5%, 90.0%, 79.0%, and 59.0%, respectively. As HER2 measurement by tissue ddPCR showed a high concordance rate with HER2 status by IHC/SISH, it could replace tissue IHC/SISH testing in gastric cancer. These findings may contribute to the development of tissue and plasma HER2 testing that would be useful in daily practice.

Indexed as

Cell-Free Nucleic AcidsDNA Copy Number VariationsErb-b2 Receptor Tyrosine KinasesHumansImmunohistochemistryIn Situ HybridizationPolymerase Chain ReactionStomach NeoplasmsCell-Free Nucleic AcidsErb-b2 Receptor Tyrosine Kinases

Identifiers

PMID32144300
PMCPMC7060190
OpenAlexW3009158442

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.