Evidence map›Paper›PMID 32143567›Full record

ArticleBMC genomics2020

Genome-wide identification and expression analysis of PUB genes in cotton.

Xuke Lu, Na Shu, Delong Wang, Junjuan Wang, Xiugui Chen, Binglei Zhang, Shuai Wang, Lixue Guo, Chao Chen, Wuwei Ye

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 56 citations in OpenAlex.

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  7. Genome-wide identification ofFrontiers in genetics · 2024
    Article
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  12. Article
  13. How Many Faces Does the Plant U-Box E3 Ligase Have?International journal of molecular sciences · 2022
    Review
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  15. Article
  16. Integrative Analysis of theFrontiers in plant science · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Xuke LuState Key Laboratory of Cotton Biology/ Institute of Cotton Research, Chinese Academy of Agricultural Sciences / Key Laboratory for Cotton Genetic Improvement, Anyang, 455000, Henan, China.
Na ShuHanzhong Agricultural Science Institute, Hanzhong, 723000, Shanxi, China.
Delong WangState Key Laboratory of Cotton Biology/ Institute of Cotton Research, Chinese Academy of Agricultural Sciences / Key Laboratory for Cotton Genetic Improvement, Anyang, 455000, Henan, China.
Junjuan WangState Key Laboratory of Cotton Biology/ Institute of Cotton Research, Chinese Academy of Agricultural Sciences / Key Laboratory for Cotton Genetic Improvement, Anyang, 455000, Henan, China.
Xiugui ChenState Key Laboratory of Cotton Biology/ Institute of Cotton Research, Chinese Academy of Agricultural Sciences / Key Laboratory for Cotton Genetic Improvement, Anyang, 455000, Henan, China.
Binglei ZhangState Key Laboratory of Cotton Biology/ Institute of Cotton Research, Chinese Academy of Agricultural Sciences / Key Laboratory for Cotton Genetic Improvement, Anyang, 455000, Henan, China.
Shuai WangState Key Laboratory of Cotton Biology/ Institute of Cotton Research, Chinese Academy of Agricultural Sciences / Key Laboratory for Cotton Genetic Improvement, Anyang, 455000, Henan, China.
Lixue GuoState Key Laboratory of Cotton Biology/ Institute of Cotton Research, Chinese Academy of Agricultural Sciences / Key Laboratory for Cotton Genetic Improvement, Anyang, 455000, Henan, China.
Chao ChenState Key Laboratory of Cotton Biology/ Institute of Cotton Research, Chinese Academy of Agricultural Sciences / Key Laboratory for Cotton Genetic Improvement, Anyang, 455000, Henan, China.
Wuwei YeState Key Laboratory of Cotton Biology/ Institute of Cotton Research, Chinese Academy of Agricultural Sciences / Key Laboratory for Cotton Genetic Improvement, Anyang, 455000, Henan, China. yew158@163.com.
Cotton Research Institute · CNChinese Academy of Agricultural Sciences · CNHanzhong People's Hospital · CN

Funding

National Key Research and Development Program 2016YFD0101006
6 · The paper itself

Abstract

backgroundThe U-box gene encodes a ubiquitin ligase that contain U-box domain. The plant U-box gene (PUB) plays an important role in the response to stresses, but few reports about PUBs in cotton were available. Therefore research on PUBs is of great importance and a necessity when studying the mechanisms of stress- tolerance in cotton.

resultsIn this study, we identified 93, 96, 185 and 208 PUBs from four sequenced cotton species G. raimondii (D

conclusionsThis study reported the genome-wide identification, structure, evolution and expression analysis of PUBs in cotton, and the results showed that the PUBs were highly conserved throughout the evolutionary history of cotton. All PUB genes were involved in the response to abiotic stresses (including salt, drought, hot and cold) to varying degrees.

Indexed as

ChromosomesExonsGene DuplicationGene Expression Regulation, PlantGenes, PlantGenome-Wide Association StudyGossypiumIntronsStress, PhysiologicalUbiquitin-Protein LigasesUbiquitin-Protein LigasesCollinearityCottonEvolutionHomologous gene pairsPUB geneU-box domain

Identifiers

PMID32143567
PMCPMC7060542
OpenAlexW3012496290

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.