Evidence map›Paper›PMID 32141496›Full record

ArticleThe Biochemical journal2020

Structural insights into the mechanism of oxidative activation of heme-free H-NOX from Vibrio cholerae.

Roma Mukhopadhyay, Kelly N Chacón, Jacqueline M Jarvis, Marat R Talipov, Erik T Yukl

Open access · hybridAbstract read
In one paragraph

Article in The Biochemical journal, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.3field-weighted citation impact, top 47% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. On or Off: Life-Changing Decisions Made byInfectious microbes & diseases · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Roma MukhopadhyayDepartment of Chemistry and Biochemistry, New Mexico State University, Las Cruces, NM 88003, U.S.A.
Kelly N ChacónDepartment of Chemistry, Reed College, Portland, OR 97202, U.S.A.
Jacqueline M JarvisDepartment of Plant and Environmental Sciences, New Mexico State University, Las Cruces, NM 88003, U.S.A.
Marat R TalipovDepartment of Chemistry and Biochemistry, New Mexico State University, Las Cruces, NM 88003, U.S.A.
Erik T YuklDepartment of Chemistry and Biochemistry, New Mexico State University, Las Cruces, NM 88003, U.S.A.
New Mexico State University · USReed College · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bacterial heme nitric oxide/oxygen (H-NOX) domains are nitric oxide (NO) or oxygen sensors. This activity is mediated through binding of the ligand to a heme cofactor. However, H-NOX from Vibrio cholerae (Vc H-NOX) can be easily purified in a heme-free state that is capable of reversibly responding to oxidation, suggesting a heme-independent function as a redox sensor. This occurs by oxidation of Cys residues at a zinc-binding site conserved in a subset of H-NOX homologs. Remarkably, zinc is not lost from the protein upon oxidation, although its ligation environment is significantly altered. Using a combination of computational and experimental approaches, we have characterized localized structural changes that accompany the formation of specific disulfide bonds between Cys residues upon oxidation. Furthermore, the larger-scale structural changes accompanying oxidation appear to mimic those changes observed upon NO binding to the heme-bound form. Thus, Vc H-NOX and its homologs may act as both redox and NO sensors by completely separate mechanisms.

Indexed as

Amino Acid SequenceBacterial ProteinsBinding SitesComputational BiologyCrystallography, X-RayHemeNitric OxideOxidative StressProtein Structure, SecondaryVibrio choleraeBacterial ProteinsHemeNitric Oxidedisulphide bondsredox signallingzinc

Identifiers

PMID32141496
PMCPMC7108781
OpenAlexW3009449326

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.