Evidence map›Paper›PMID 32140886›Full record

ArticleRice (New York, N.Y.)2020

Indeterminate Domain Proteins Regulate Rice Defense to Sheath Blight Disease.

Qian Sun, Dan Dan Li, Jin Chu, De Peng Yuan, Shuang Li, Li Juan Zhong, Xiao Han, Yuan Hu Xuan

Open access · goldAbstract read
In one paragraph

Article in Rice (New York, N.Y.), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed, 1 pooled it
4.2field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 1 synthesis or guideline pooled it, 36 citations in OpenAlex.

  1. Frontiers in plant science · 2022
    Pooled it
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  11. A Series of Novel Alleles ofPlants (Basel, Switzerland) · 2025
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  13. Review
  14. Genome-Wide Characterization and Haplotypic Variation Analysis of theInternational journal of molecular sciences · 2024
    Article
  15. Article
  16. Article
  17. Article
  18. Progress in rice sheath blight resistance research.Frontiers in plant science · 2023
    Review
  19. Genome-Wide Identification of the Highly ConservedInternational journal of molecular sciences · 2022
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 1 country.

Qian SunCollege of Plant Protection, Shenyang Agricultural University, Shenyang, 110866, China.
Dan Dan LiCollege of Plant Protection, Shenyang Agricultural University, Shenyang, 110866, China.
Jin ChuInstitute of Plant Protection, Liaoning Academy of Agricultural Sciences, Shenyang, 110161, China.
De Peng YuanCollege of Plant Protection, Shenyang Agricultural University, Shenyang, 110866, China.
Shuang LiShaanxi Key Laboratory of Chinese Jujube, Yan'an University, Yan'an, 716000, Shaanxi, China.
Li Juan ZhongMicrobial Research Institute, Liaoning Academy of Agricultural Sciences, Chaoyang, 122000, China.
Xiao HanCollege of Biological Science and Engineering, Fuzhou University, Fuzhou, 350108, China. xiaohan@caas.cn.
Yuan Hu XuanCollege of Plant Protection, Shenyang Agricultural University, Shenyang, 110866, China. xuanyuanhu115@syau.edu.cn.ORCID http://orcid.org/0000-0002-4704-8090
Shenyang Agricultural University · CNFuzhou University · CNInstitute of Plant Protection · CNLiaoning Academy of Agricultural Sciences · CNYan'an University · CN

Funding

National Key R&D Program of China 2016YFD0101004Shenyang Agricultural University 880416008
6 · The paper itself

Abstract

backgroundLoose Plant Architecture 1 (LPA1), an indeterminate domain (IDD) protein, exhibits almost no expression in the leaves, but the overexpression of LPA1 significantly increases the resistance of rice to sheath blight disease (ShB) via the activation of PIN-FORMED 1a (PIN1a).

resultsIn this study, we determined that Rhizoctonia solani infection significantly induced LPA1 expression in the leaves, and lpa1 was more susceptible to R. solani compared with the wild-type and revertant plants. In addition, infection with R. solani altered the expression of IDD3, IDD5, IDD10, and IDD13, and yeast two-hybrid, split-GFP, and coimmunoprecipitation assays showed that LPA1 interacts with IDD3 and IDD13. IDD13 RNAi plants were more susceptible, while IDD13 overexpressors were less susceptible to ShB compared with the wild-type. In parallel, idd3 exhibited no significant differences, while IDD3 overexpressors were more susceptible compared to the wild-type response to ShB. Additional chromatin-immunoprecipitation and electrophoretic mobility shift assay experiments indicated that IDD13 and IDD3 bound to the PIN1a promoter, and the transient assay indicated that IDD13 and IDD3 positively and negatively regulate PIN1a expression, respectively. Moreover, IDD13, IDD3, and LPA1 form a transcription factor complex that regulates PIN1a. A genetic study showed that the LPA1 repressor lines were similar to lpa1/IDD13 RNAi and were more susceptible than the lpa1 and IDD13 RNAi plants in response to ShB. The overexpression of IDD13 increased resistance to ShB in the lpa1 background.

conclusionsTaken together, our analyses established that IDD3, IDD13, and LPA1 form a transcription factor complex to regulate the defense of rice against ShB possibly via the regulation of PIN1a.

Indexed as

DefenseIndeterminate domain proteinRiceSheath blight diseaseTranscription activation

Identifiers

PMID32140886
PMCPMC7058748
OpenAlexW3012146020

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.