Evidence map›Paper›PMID 32140767›Full record

ArticlePlant cell reports2020

Genome-wide identification of the NPR1-like gene family in Brassica napus and functional characterization of BnaNPR1 in resistance to Sclerotinia sclerotiorum.

Zheng Wang, Lu-Yue Ma, Xiao Li, Feng-Yun Zhao, Rehman Sarwar, Jun Cao, Yu-Long Li, Li-Na Ding, Ke-Ming Zhu, Yan-Hua Yang and 1 more

Abstract read
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In one paragraph

Article in Plant cell reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Genome wide identification of theFrontiers in microbiology · 2024
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  5. Functional Analysis of a Salicylate Hydroxylase inJournal of fungi (Basel, Switzerland) · 2023
    Article
  6. Article
  7. Genetic breakthroughs in theFrontiers in plant science · 2023
    Review
  8. Review
  9. UnravelingPlants (Basel, Switzerland) · 2022
    Article
  10. Understanding Host-Pathogen Interactions inPlants (Basel, Switzerland) · 2020
    Review
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Zheng WangInstitute of Life Sciences, Jiangsu University, 301# Xuefu Road, Zhenjiang, 212013, People's Republic of China.ORCID http://orcid.org/0000-0001-9647-9519
Lu-Yue MaInstitute of Life Sciences, Jiangsu University, 301# Xuefu Road, Zhenjiang, 212013, People's Republic of China.
Xiao LiInstitute of Life Sciences, Jiangsu University, 301# Xuefu Road, Zhenjiang, 212013, People's Republic of China.
Feng-Yun ZhaoInstitute of Life Sciences, Jiangsu University, 301# Xuefu Road, Zhenjiang, 212013, People's Republic of China.
Rehman SarwarInstitute of Life Sciences, Jiangsu University, 301# Xuefu Road, Zhenjiang, 212013, People's Republic of China.
Jun CaoInstitute of Life Sciences, Jiangsu University, 301# Xuefu Road, Zhenjiang, 212013, People's Republic of China.
Yu-Long LiInstitute of Life Sciences, Jiangsu University, 301# Xuefu Road, Zhenjiang, 212013, People's Republic of China.
Li-Na DingInstitute of Life Sciences, Jiangsu University, 301# Xuefu Road, Zhenjiang, 212013, People's Republic of China.
Ke-Ming ZhuInstitute of Life Sciences, Jiangsu University, 301# Xuefu Road, Zhenjiang, 212013, People's Republic of China.
Yan-Hua YangInstitute of Life Sciences, Jiangsu University, 301# Xuefu Road, Zhenjiang, 212013, People's Republic of China.
Xiao-Li TanInstitute of Life Sciences, Jiangsu University, 301# Xuefu Road, Zhenjiang, 212013, People's Republic of China. xltan@ujs.edu.cn.ORCID http://orcid.org/0000-0002-9358-605X
Jiangsu University · CN

Funding

National Key Research and Development Program of China 2018YFD0201003National Natural Science Foundation of China 31771836
6 · The paper itself

Abstract

key messageThe BnaNPR1-like gene family was identified in B. napus, and it was revealed that repression of BnaNPR1 significantly reduces resistance toS. sclerotiorum, intensifies ROS accumulation, and changes the expression of genes associated with SA and JA/ET signaling in response to this pathogen. The NONEXPRESSOR OF PATHOGENESIS-RELATED GENES1 (NPR1) and related NPR1-like genes play an important role in regulating plant defense. Oilseed rape (Brassica napus L.) is an important oilseed crop; however, little is known about the B. napus (Bna) NPR1-like gene family. Here, a total of 19 BnaNPR1-like genes were identified in the B. napus genome, and then named according to their respective best match in Arabidopsis thaliana (At), which led to the determination of B. napus homologs of every AtNPR1-like gene. Analysis of important protein domains and functional motifs indicated the conservation and variation among these homologs. Phylogenetic analysis of these BnaNPR1-like proteins and their Arabidopsis homologs revealed six distinct sub-clades, consequently indicating that their name classification totally conformed to their phylogenetic relationships. Further, B. napus transcriptomic data showed that the expression of three BnaNPR1s was significantly down-regulated in response to infection with Sclerotinia sclerotiorum, the most important pathogen of this crop, whereas BnaNPR2/3/4/5/6s did not show the expression differences in general. Further, we generated B. napus BnaNPR1-RNAi lines to interpret the effect of the down-regulated expression of BnaNPR1s on resistance to S. sclerotiorum. The results showed that BnaNPR1-RNAi significantly decreased this resistance. Further experiments revealed that BnaNPR1-RNAi intensified ROS production and changed defense responses in the interaction of plants with this pathogen. These results indicated that S. sclerotiorum might use BnaNPR1 to regulate specific physiological processes of B. napus, such as ROS production and SA defense response, for the infection.

Indexed as

Genes, PlantAnti-Infective AgentsArabidopsis ProteinsAscomycotaBrassica napusDisease ResistanceGenome, PlantPhylogenyPlant DiseasesPlant ProteinsPlants, Genetically ModifiedRNA InterferenceSequence AlignmentTranscriptomeAnti-Infective AgentsArabidopsis ProteinsPlant ProteinsBrassica napusNPR1-like geneRNAiSclerotinia sclerotiorumTranscriptome analysis

Identifiers

PMID32140767
OpenAlexW3010208066

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.