Evidence map›Paper›PMID 32140299›Full record

ArticlePeerJ2020

Transcriptome analysis and transcription factors responsive to drought stress in

Xia An, Guanrong Jin, Xiahong Luo, Changli Chen, Wenlue Li, Guanlin Zhu

Open access · goldAbstract read
In one paragraph

Article in PeerJ, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.7field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Functional Study ofInternational journal of molecular sciences · 2023
    Article
  5. The complete chloroplast genome ofFrontiers in plant science · 2023
    Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Xia AnZhejiang Xiaoshan Institute of Cotton & Bast Fiber Crops, Zhejiang Academy of Agricultural Sciences, Hangzhou, China.
Guanrong JinZhejiang Xiaoshan Institute of Cotton & Bast Fiber Crops, Zhejiang Academy of Agricultural Sciences, Hangzhou, China.
Xiahong LuoZhejiang Xiaoshan Institute of Cotton & Bast Fiber Crops, Zhejiang Academy of Agricultural Sciences, Hangzhou, China.
Changli ChenZhejiang Xiaoshan Institute of Cotton & Bast Fiber Crops, Zhejiang Academy of Agricultural Sciences, Hangzhou, China.
Wenlue LiZhejiang Xiaoshan Institute of Cotton & Bast Fiber Crops, Zhejiang Academy of Agricultural Sciences, Hangzhou, China.
Guanlin ZhuZhejiang Xiaoshan Institute of Cotton & Bast Fiber Crops, Zhejiang Academy of Agricultural Sciences, Hangzhou, China.
ZheJiang Academy of Agricultural Sciences · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Kenaf is an annual bast fiber crop. Drought stress influences the growth of kenaf stems and causes a marked decrease in fiber yield and quality. Research on the drought resistance of kenaf is therefore important, but limited information is available on the response mechanism of kenaf to drought stress. In this study, a transcriptome analysis of genes associated with the drought stress response in kenaf was performed. About 264,244,210 bp high-quality reads were obtained after strict quality inspection and data cleaning. Compared with the control group, 4,281 genes were differentially expressed in plants treated with drought stress for 7 d (the drought stress group). Compared with the control group, 605 genes showed differential expression in plants subjected to drought stress for 6 d and then watered for 1 d (the rewatering group). Compared with the rewatering group, 5,004 genes were differentially expressed in the drought stress group. In the comparisons between the drought stress and control groups, and between the drought stress and rewatering groups, the pathway that showed the most highly significant enrichment was plant hormone signal transduction. In the comparison between the rewatering and control groups, the pathways that showed the most highly significant enrichment were starch and sucrose metabolism. Eight transcription factors belonging to the AP2/ERF, MYB, NAC, and WRKY families (two transcription factors per family) detected in the leaf transcriptome were associated with the drought stress response. The identified transcription factors provide a basis for further investigation of the response mechanism of kenaf to drought stress.

Indexed as

KenafPaired-end sequencingStress resistanceTranscription factor

Identifiers

PMID32140299
PMCPMC7047868
OpenAlexW3008824344

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.