Evidence map›Paper›PMID 32139792›Full record

ArticleScientific reports2020

Characterization of tomato protein kinases embedding guanylate cyclase catalytic center motif.

Hafizur Rahman, Xin-Yao Wang, You-Ping Xu, Yu-Han He, Xin-Zhong Cai

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. Amino acid motifs for the identification of novel protein interactants.Computational and structural biotechnology journal · 2023
    Review
  9. New Horizons in Plant Cell Signaling.International journal of molecular sciences · 2022
    Article
  10. BdGUCD1 and Cyclic GMP Are Required for Responses ofInternational journal of molecular sciences · 2022
    Article
  11. International journal of molecular sciences · 2021
    Article
  12. Moonlighting Proteins Shine New Light on Molecular Signaling Niches.International journal of molecular sciences · 2021
    Review
  13. The Complex Story of Plant Cyclic Nucleotide-Gated Channels.International journal of molecular sciences · 2021
    Review
  14. Article
  15. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Hafizur Rahman *Institute of Biotechnology, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, China.
Xin-Yao Wang *Institute of Biotechnology, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, China.
You-Ping XuCenter of Analysis and Measurement, Zhejiang University, Hangzhou, 310058, China.
Yu-Han HeInstitute of Biotechnology, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, China.
Xin-Zhong CaiInstitute of Biotechnology, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, China. xzhcai@zju.edu.cn.
Zhejiang University · CN

Funding

Zhejiang Provincial Natural Science Foundation LZ18C140002
6 · The paper itself

Abstract

Guanylate cyclases (GCs) are enzymes that catalyze the reaction to produce cyclic GMP (cGMP), a key signaling molecule in eukaryotes. Nevertheless, systemic identification and functional analysis of GCs in crop plant species have not yet been conducted. In this study, we systematically identified GC genes in the economically important crop tomato (Solanum lycopersicum L.) and analyzed function of two putative tomato GC genes in disease resistance. Ninety-nine candidate GCs containing GC catalytic center (GC-CC) motif were identified in tomato genome. Intriguingly, all of them were putative protein kinases embedding a GC-CC motif within the protein kinase domain, which was thus tentatively named as GC-kinases here. Two homologs of Arabidopsis PEPRs, SlGC17 and SlGC18 exhibited in vitro GC activity. Co-silencing of SlGC17 and SlGC18 genes significantly reduced resistance to tobacco rattle virus, fungus Sclerotinia sclerotiorum, and bacterium Pseudomonas syringae pv. tomato (Pst) DC3000. Moreover, co-silencing of these two genes attenuated PAMP and DAMP-triggered immunity as shown by obvious decrease of flg22, chitin and AtPep1-elicited Ca

Indexed as

Gene Expression Regulation, PlantAmino Acid SequenceCalciumCatalytic DomainDisease ResistanceGenome, PlantGuanylate CyclasePlant DiseasesPlant ProteinsProtein KinasesSequence HomologySignal TransductionSolanum lycopersicumCalciumGuanylate CyclasePlant ProteinsProtein Kinases

Identifiers

PMID32139792
PMCPMC7057975
OpenAlexW3009061522

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.