Evidence map›Paper›PMID 32139768›Full record

ArticleScientific reports2020

A highly conserved complete accessory Escherichia coli type III secretion system 2 is widespread in bloodstream isolates of the ST69 lineage.

Stephen Fox, Cosmika Goswami, Matthew Holden, James P R Connolly, James Mordue, Nicky O'Boyle, Andrew Roe, Martin Connor, Alistair Leanord, Tom J Evans

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.8field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
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  4. Review
  5. Review
  6. Global Genomic Epidemiology ofMicroorganisms · 2022
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  7. Dissemination of High-Risk ClonesMicroorganisms · 2022
    Article
  8. Article
  9. Article
  10. Characterisation of Early PositiveAntibiotics (Basel, Switzerland) · 2021
    Article
  11. Article
  12. New Insights Into DAEC and EAEC Pathogenesis and Phylogeny.Frontiers in cellular and infection microbiology · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Stephen FoxInstitute of Infection, Immunity and Inflammation, University of Glasgow, Glasgow, UK.ORCID http://orcid.org/0000-0001-5731-8755
Cosmika GoswamiInstitute of Infection, Immunity and Inflammation, University of Glasgow, Glasgow, UK.
Matthew HoldenSchool of Medicine, University of St. Andrews, St. Andrews, UK.ORCID http://orcid.org/0000-0002-4958-2166
James P R ConnollyInstitute of Infection, Immunity and Inflammation, University of Glasgow, Glasgow, UK.ORCID http://orcid.org/0000-0002-0394-3413
James MordueInstitute of Infection, Immunity and Inflammation, University of Glasgow, Glasgow, UK.
Nicky O'BoyleInstitute of Infection, Immunity and Inflammation, University of Glasgow, Glasgow, UK.
Andrew RoeInstitute of Infection, Immunity and Inflammation, University of Glasgow, Glasgow, UK.ORCID http://orcid.org/0000-0003-3698-6134
Martin ConnorDumfries and Galloway Royal Infirmary, Dumfries, UK.
Alistair LeanordInstitute of Infection, Immunity and Inflammation, University of Glasgow, Glasgow, UK.
Tom J EvansInstitute of Infection, Immunity and Inflammation, University of Glasgow, Glasgow, UK. tom.evans@glasgow.ac.uk.ORCID http://orcid.org/0000-0002-4140-6352
University of Glasgow · GBDumfries and Galloway Royal Infirmary · GBUniversity of St Andrews · GBWellcome Centre for Molecular Parasitology · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bacterial type III secretion systems (T3SSs) play an important role in pathogenesis of Gram-negative infections. Enteropathogenic and enterohemorrhagic Escherichia coli contain a well-defined T3SS but in addition a second T3SS termed E. coli T3SS 2 (ETT2) has been described in a number of strains of E. coli. The majority of pathogenic E. coli contain elements of a genetic locus encoding ETT2, but which has undergone significant mutational attrition rendering it without predicted function. Only a very few strains have been reported to contain an intact ETT2 locus. To investigate the occurrence of the ETT2 locus in strains of human pathogenic E. coli, we carried out genomic sequencing of 162 isolates obtained from patient blood cultures in Scotland. We found that 22 of 26 sequence type (ST) 69 isolates from this collection contained an intact ETT2 together with an associated eip locus which encodes putative secreted ETT2 effectors as well as eilA, a gene encoding a putative transcriptional regulator of ETT2 associated genes. Using a reporter gene for eilA activation, we defined conditions under which this gene was differentially activated. Analysis of published E. coli genomes with worldwide representation showed that ST69 contained an intact ETT2 in these strains as well. The conservation of the genes encoding ETT2 in human pathogenic ST69 strains strongly suggests it has importance in infection, although its exact functional role remains obscure.

Indexed as

Escherichia coli InfectionsEscherichia coli ProteinsGene Expression Regulation, BacterialHumansMutationType III Secretion SystemsEscherichia coli ProteinsType III Secretion Systems

Identifiers

PMID32139768
PMCPMC7058095
OpenAlexW3010297661

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.