Evidence map›Paper›PMID 32139688›Full record

ArticleNature communications2020

Identification of region-specific astrocyte subtypes at single cell resolution.

Mykhailo Y Batiuk, Araks Martirosyan, Jérôme Wahis, Filip de Vin, Catherine Marneffe, Carola Kusserow, Jordan Koeppen, João Filipe Viana, João Filipe Oliveira, Thierry Voet and 3 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 513 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
513citing papers in PubMed, 2 pooled it
43.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

513 citing papers in PubMed, 2 syntheses or guidelines pooled it, 798 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Article
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  10. Distinct single-nucleus RNA-seq changes among non-neuronal cells in ADNC, LATE-NC, and mixed pathologies.Alzheimer's & dementia : the journal of the Alzheimer's Association · 2026
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453 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 6 institutions in 4 countries.

Mykhailo Y Batiuk *Laboratory of Glia Biology, VIB-KU Leuven Center for Brain and Disease Research, Leuven, Belgium.ORCID http://orcid.org/0000-0001-6681-4048
Araks Martirosyan *Laboratory of Glia Biology, VIB-KU Leuven Center for Brain and Disease Research, Leuven, Belgium.
Jérôme WahisLaboratory of Glia Biology, VIB-KU Leuven Center for Brain and Disease Research, Leuven, Belgium.ORCID http://orcid.org/0000-0002-3816-4583
Filip de VinLaboratory of Glia Biology, VIB-KU Leuven Center for Brain and Disease Research, Leuven, Belgium.
Catherine MarneffeLaboratory of Glia Biology, VIB-KU Leuven Center for Brain and Disease Research, Leuven, Belgium.
Carola KusserowLaboratory of Glia Biology, VIB-KU Leuven Center for Brain and Disease Research, Leuven, Belgium.
Jordan KoeppenLaboratory of Glia Biology, VIB-KU Leuven Center for Brain and Disease Research, Leuven, Belgium.
João Filipe VianaLife and Health Sciences Research Institute (ICVS), University of Minho, Braga, Portugal.
João Filipe OliveiraLife and Health Sciences Research Institute (ICVS), University of Minho, Braga, Portugal.ORCID http://orcid.org/0000-0002-1005-2328
Thierry VoetSanger Institute-EBI Single-Cell Genomics Centre, Wellcome Trust Sanger Institute, Hinxton, UK.
Chris P PontingSanger Institute-EBI Single-Cell Genomics Centre, Wellcome Trust Sanger Institute, Hinxton, UK.ORCID http://orcid.org/0000-0003-0202-7816
T Grant BelgardMRC Functional Genomics Unit, Department of Physiology, Anatomy and Genetics, University of Oxford, Oxford, UK.
Matthew G HoltLaboratory of Glia Biology, VIB-KU Leuven Center for Brain and Disease Research, Leuven, Belgium. Matthew.Holt@kuleuven.vib.be.ORCID http://orcid.org/0000-0002-8958-4027
VIB-KU Leuven Center for Brain & Disease Research · BEWellcome Sanger Institute · GBPolytechnic Institute of Cávado and Ave · PTUniversity of Minho · PTUniversity of Oxford · GBVIB-KU Leuven Center for Microbiology · BE

Funding

Medical Research Council MC_UU_00007/15
6 · The paper itself

Abstract

Astrocytes, a major cell type found throughout the central nervous system, have general roles in the modulation of synapse formation and synaptic transmission, blood-brain barrier formation, and regulation of blood flow, as well as metabolic support of other brain resident cells. Crucially, emerging evidence shows specific adaptations and astrocyte-encoded functions in regions, such as the spinal cord and cerebellum. To investigate the true extent of astrocyte molecular diversity across forebrain regions, we used single-cell RNA sequencing. Our analysis identifies five transcriptomically distinct astrocyte subtypes in adult mouse cortex and hippocampus. Validation of our data in situ reveals distinct spatial positioning of defined subtypes, reflecting the distribution of morphologically and physiologically distinct astrocyte populations. Our findings are evidence for specialized astrocyte subtypes between and within brain regions. The data are available through an online database (https://holt-sc.glialab.org/), providing a resource on which to base explorations of local astrocyte diversity and function in the brain.

Indexed as

Organ SpecificitySingle-Cell AnalysisAnimalsAstrocytesCalcium SignalingCell ShapeGene Expression RegulationMice, Inbred C57BLNeurogenesisRNA, MessengerRNA, Messenger

Identifiers

PMID32139688
PMCPMC7058027
OpenAlexW3009790191

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.