Evidence map›Paper›PMID 32139510›Full record

ArticleThe Journal of biological chemistry2020

The dynein light chain 8 (LC8) binds predominantly "in-register" to a multivalent intrinsically disordered partner.

Patrick N Reardon, Kayla A Jara, Amber D Rolland, Delaney A Smith, Hanh T M Hoang, James S Prell, Elisar J Barbar

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.1field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 32 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Patrick N ReardonOregon State University NMR Facility, Oregon State University, Corvallis, Oregon 97331.ORCID 0000-0002-6858-0086
Kayla A JaraDepartment of Biochemistry and Biophysics, Oregon State University, Corvallis, Oregon 97331.
Amber D RollandDepartment of Chemistry and Biochemistry, University of Oregon, Eugene, Oregon 97403.ORCID 0000-0002-7905-8250
Delaney A SmithDepartment of Biochemistry and Biophysics, Oregon State University, Corvallis, Oregon 97331.
Hanh T M HoangDepartment of Biochemistry and Biophysics, Oregon State University, Corvallis, Oregon 97331.
James S PrellDepartment of Chemistry and Biochemistry, University of Oregon, Eugene, Oregon 97403.
Elisar J BarbarDepartment of Biochemistry and Biophysics, Oregon State University, Corvallis, Oregon 97331 Elisar.Barbar@oregonstate.edu.ORCID 0000-0003-4892-5259
Oregon State University · USUniversity of Oregon · US

Funding

MOLECULAR BIOLOGY AND BIOPHYSICST32GM007759 · NIGMS · UNIVERSITY OF OREGON · PI NOLEN, BRADLEY J · 1985 to 2021
$8.5M
Acquisition of a 700 MHz NMR SpectrometerS10OD018518 · OD · OREGON STATE UNIVERSITY · PI BARBAR, ELISAR J · 2015 to 2015
$1.3M
NIGMS NIH HHS T32 GM007759NIH HHS S10 OD018518
6 · The paper itself

Abstract

Dynein light chain 8 (LC8) interacts with intrinsically disordered proteins (IDPs) and influences a wide range of biological processes. It is becoming apparent that among the numerous IDPs that interact with LC8, many contain multiple LC8-binding sites. Although it is established that LC8 forms parallel IDP duplexes with some partners, such as nucleoporin Nup159 and dynein intermediate chain, the molecular details of these interactions and LC8's interactions with other diverse partners remain largely uncharacterized. LC8 dimers could bind in either a paired "in-register" or a heterogeneous off-register manner to any of the available sites on a multivalent partner. Here, using NMR chemical shift perturbation, analytical ultracentrifugation, and native electrospray ionization MS, we show that LC8 forms a predominantly in-register complex when bound to an IDP domain of the multivalent regulatory protein ASCIZ. Using saturation transfer difference NMR, we demonstrate that at substoichiometric LC8 concentrations, the IDP domain preferentially binds to one of the three LC8 recognition motifs. Further, the differential dynamic behavior for the three sites and the size of the fully bound complex confirmed an in-register complex. Dynamics measurements also revealed that coupling between sites depends on the linker length separating these sites. These results identify linker length and motif specificity as drivers of in-register binding in the multivalent LC8-IDP complex assembly and the degree of compositional and conformational heterogeneity as a promising emerging mechanism for tuning of binding and regulation.

Indexed as

Amino Acid SequenceAnimalsDrosophila melanogasterDrosophila ProteinsDyneinsIntrinsically Disordered ProteinsModels, MolecularProtein ConformationSequence HomologyTranscription Factorsctp protein, DrosophilaDrosophila ProteinsDyneinsIntrinsically Disordered ProteinsTranscription Factorsanalytical ultracentrifugationintrinsically disordered proteinLC8multivalencynative mass spectrometrynuclear magnetic resonance (NMR)protein assemblyprotein dynamic

Identifiers

PMID32139510
PMCPMC7152752
OpenAlexW3009599565

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.