Evidence map›Paper›PMID 32139509›Full record

ArticleThe Journal of biological chemistry2020

RPTPα phosphatase activity is allosterically regulated by the membrane-distal catalytic domain.

Yutao Wen, Shen Yang, Kuninobu Wakabayashi, Mattias N D Svensson, Stephanie M Stanford, Eugenio Santelli, Nunzio Bottini

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 24 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Yutao WenDepartment of Medicine, University of California, San Diego, La Jolla, California 92037.
Shen YangDepartment of Medicine, University of California, San Diego, La Jolla, California 92037.
Kuninobu WakabayashiDepartment of Medicine, University of California, San Diego, La Jolla, California 92037.
Mattias N D SvenssonDepartment of Medicine, University of California, San Diego, La Jolla, California 92037.ORCID 0000-0001-8077-9824
Stephanie M StanfordDepartment of Medicine, University of California, San Diego, La Jolla, California 92037.
Eugenio SantelliDepartment of Medicine, University of California, San Diego, La Jolla, California 92037.
Nunzio BottiniDepartment of Medicine, University of California, San Diego, La Jolla, California 92037 nbottini@health.ucsd.edu.
La Jolla Institute for Immunology · USUniversity of California San Diego · US

Funding

Role of PTPRS in Rheumatoid ArtiritisR01AR066053 · NIAMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI BOTTINI, NUNZIO · 2014 to 2025
$4.0M
Pilatus 6mS10OD021832 · OD · UNIVERSITY OF CALIFORNIA BERKELEY · PI ADAMS, PAUL DAVID · 2016 to 2016
$980k
NIAMS NIH HHS R01 AR066053NIH HHS S10 OD021832
6 · The paper itself

Abstract

Receptor-type protein tyrosine phosphatase α (RPTPα) is an important positive regulator of SRC kinase activation and a known promoter of cancer growth, fibrosis, and arthritis. The domain structure of RPTPs comprises an extracellular region, a transmembrane helix, and two tandem intracellular catalytic domains referred to as D1 and D2. The D2 domain of RPTPs is believed to mostly play a regulatory function; however, no regulatory model has been established for RPTPα-D2 or other RPTP-D2 domains. Here, we solved the 1.8 Å resolution crystal structure of the cytoplasmic region of RPTPα, encompassing D1 and D2, trapped in a conformation that revealed a possible mechanism through which D2 can allosterically inhibit D1 activity. Using a D2-truncation RPTPα variant and mutational analysis of the D1/D2 interfaces, we show that D2 inhibits RPTPα phosphatase activity and identified a

Indexed as

Allosteric RegulationAmino Acid SequenceCatalytic DomainCell MembraneCrystallography, X-RayHumansModels, MolecularProtein BindingProtein ConformationProtein Tyrosine PhosphatasesReceptor-Like Protein Tyrosine Phosphatases, Class 4Sequence HomologyProtein Tyrosine PhosphatasesPTPRA protein, humanReceptor-Like Protein Tyrosine Phosphatases, Class 4allosteric regulationcancercell signalingcrystal structureprotein phosphataseprotein structuresignal transductiontyrosine-protein phosphatase (tyrosine phosphatase)

Identifiers

PMID32139509
PMCPMC7152759
OpenAlexW3010573911

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.