ArticleBMC genomics2020
Genome-wide discovery and functional prediction of salt-responsive lncRNAs in duckweed.
Article in BMC genomics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.
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Who cites it
20 citing papers in PubMed, 50 citations in OpenAlex.
- Review
- Identification and Network Construction of mRNAs, miRNAs, lncRNAs, and circRNAs in Sweetpotato (International journal of molecular sciences · 2025Article
- Extensive post-transcriptional regulation revealed by integrative transcriptome and proteome analyses in salicylic acid-induced flowering in duckweed (Frontiers in plant science · 2024Article
- Identifying long non-coding RNAs involved in heat stress response during wheat pollen development.Frontiers in plant science · 2024Article
- Genome-wide analysis of long noncoding RNAs in response to salt stress in Nicotiana tabacum.BMC plant biology · 2023Article
- Regulation mechanism and pathogenic role of lncRNA plasmacytoma variant translocation 1 (Genes & diseases · 2023Review
- Review
- Genome-wide identification of long non-coding RNAs and their potential functions in radish response to salt stress.Frontiers in genetics · 2023Article
- Role of microRNA miR171 in plant development.PeerJ · 2023Review
- Long non-coding RNA-mediated competing endogenous RNA regulatory network during flower development and color formation inFrontiers in plant science · 2023Article
- Plant long non-coding RNAs: identification and analysis to unveil their physiological functions.Frontiers in plant science · 2023Review
- Article
- Integrated analysis of long non-coding RNAs and mRNAs reveals the regulatory network of maize seedling root responding to salt stress.BMC genomics · 2022Article
- Uncovering the Epigenetic Marks Involved in Mediating Salt Stress Tolerance in Plants.Frontiers in genetics · 2022Review
- Return of the Lemnaceae: duckweed as a model plant system in the genomics and postgenomics era.The Plant cell · 2021Article
- Identification of the specific long-noncoding RNAs involved in night-break mediated flowering retardation in Chenopodium quinoa.BMC genomics · 2021Article
- Comparative analysis of long noncoding RNAs in angiosperms and characterization of long noncoding RNAs in response to heat stress in Chinese cabbage.Horticulture research · 2021Article
- Differential Expression of lncRNAs and miRNAs Between Self-Rooting Juvenile and Donor Clones Unveils Novel Insight Into the Molecular Regulation of Rubber Biosynthesis inFrontiers in plant science · 2021Article
- Whole-Transcriptome RNA Sequencing Reveals the Global Molecular Responses and CeRNA Regulatory Network of mRNAs, lncRNAs, miRNAs and circRNAs in Response to Salt Stress in Sugar Beet (International journal of molecular sciences · 2020Article
- From Trash to Luxury: The Potential Role of Plant LncRNA in DNA Methylation During Abiotic Stress.Frontiers in plant science · 2020Review
Corrections and comments
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Authors and funding
6 authors at 1 institution in 1 country.
Funding
Abstract
backgroundSalt significantly depresses the growth and development of the greater duckweed, Spirodela polyrhiza, a model species of floating aquatic plants. Physiological responses of this plant to salt stress have been characterized, however, the roles of long noncoding RNAs (lncRNAs) remain unknown.
resultsIn this work, totally 2815 novel lncRNAs were discovered in S. polyrhiza by strand-specific RNA sequencing, of which 185 (6.6%) were expressed differentially under salinity condition. Co-expression analysis indicated that the trans-acting lncRNAs regulated their co-expressed genes functioning in amino acid metabolism, cell- and cell wall-related metabolism, hormone metabolism, photosynthesis, RNA transcription, secondary metabolism, and transport. In total, 42 lncRNA-mRNA pairs that might participate in cis-acting regulation were found, and these adjacent genes were involved in cell wall, cell cycle, carbon metabolism, ROS regulation, hormone metabolism, and transcription factor. In addition, the lncRNAs probably functioning as miRNA targets were also investigated. Specifically, TCONS_00033722, TCONS_00044328, and TCONS_00059333 were targeted by a few well-studied salt-responsive miRNAs, supporting the involvement of miRNA and lncRNA interactions in the regulation of salt stress responses. Finally, a representative network of lncRNA-miRNA-mRNA was proposed and discussed to participate in duckweed salt stress via auxin signaling.
conclusionsThis study is the first report on salt-responsive lncRNAs in duckweed, and the findings will provide a solid foundation for in-depth functional characterization of duckweed lncRNAs in response to salt stress.
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