Evidence map›Paper›PMID 32134551›Full record

ArticleThe FEBS journal2020

Peptide cargo tunes a network of correlated motions in human leucocyte antigens.

Jade R Hopkins, Rory M Crean, Dragana A M Catici, Andrew K Sewell, Vickery L Arcus, Marc W Van der Kamp, David K Cole, Christopher R Pudney

Open access · hybridAbstract read
In one paragraph

Article in The FEBS journal, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.7field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 8 citations in OpenAlex.

  1. HLA micropolymorphisms confine neoantigen conformational adaptability and guide T cell receptor selectivity.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  2. Article
  3. Review
  4. Review
  5. Structurally silent peptide anchor modifications allosterically modulate T cell recognition in a receptor-dependent manner.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 3 countries.

Jade R HopkinsDivision of Infection and Immunity, School of Medicine, Cardiff University, UK.ORCID 0000-0002-2477-1403
Rory M CreanDepartment of Biology and Biochemistry, University of Bath, UK.ORCID 0000-0003-4709-5353
Dragana A M CaticiDepartment of Biology and Biochemistry, University of Bath, UK.ORCID 0000-0003-0494-9152
Andrew K SewellDivision of Infection and Immunity, School of Medicine, Cardiff University, UK.ORCID 0000-0003-3194-3135
Vickery L ArcusSchool of Science, Faculty of Science and Engineering, University of Waikato, Hamilton, New Zealand.ORCID 0000-0001-5082-2414
Marc W Van der KampSchool of Biochemistry, University of Bristol, UK.ORCID 0000-0002-8060-3359
David K ColeDivision of Infection and Immunity, School of Medicine, Cardiff University, UK.ORCID 0000-0003-0028-9396
Christopher R PudneyDepartment of Biology and Biochemistry, University of Bath, UK.ORCID 0000-0001-6211-0086
Institute of Infection and Immunity · CAUniversity of Bath · GBCentre for Sustainable Energy · GBUniversity of Bristol · GBUniversity of Waikato · NZ

Funding

Biotechnology and Biological Sciences Research Council BB/M026280/1Medical Research Council MR/N013794/1Wellcome TrustWellcome Trust WT095767Wellcome Trust WT100327MA
6 · The paper itself

Abstract

Most biomolecular interactions are typically thought to increase the (local) rigidity of a complex, for example, in drug-target binding. However, detailed analysis of specific biomolecular complexes can reveal a more subtle interplay between binding and rigidity. Here, we focussed on the human leucocyte antigen (HLA), which plays a crucial role in the adaptive immune system by presenting peptides for recognition by the αβ T-cell receptor (TCR). The role that the peptide plays in tuning HLA flexibility during TCR recognition is potentially crucial in determining the functional outcome of an immune response, with obvious relevance to the growing list of immunotherapies that target the T-cell compartment. We have applied high-pressure/temperature perturbation experiments, combined with molecular dynamics simulations, to explore the drivers that affect molecular flexibility for a series of different peptide-HLA complexes. We find that different peptide sequences affect peptide-HLA flexibility in different ways, with the peptide cargo tuning a network of correlated motions throughout the pHLA complex, including in areas remote from the peptide-binding interface, in a manner that could influence T-cell antigen discrimination.

Indexed as

Allosteric RegulationAllosteric SiteAmino Acid Sequencebeta 2-MicroglobulinBinding SitesCrystallography, X-RayHLA-A2 AntigenHumansInsulinModels, MolecularMolecular Dynamics SimulationMotionPeptidesPressureProtein BindingProtein Conformationbeta 2-MicroglobulinHLA-A*02:01 antigenHLA-A2 AntigenInsulinPeptidespreproinsulinProtein PrecursorsReceptors, Antigen, T-Cell, alpha-betaRecombinant Proteinsallosterymolecular dynamicspeptide-human leucocyte antigenprotein flexibilityT-cell receptor

Identifiers

PMID32134551
PMCPMC8651013
OpenAlexW3010111157

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.