Evidence map›Paper›PMID 32132204›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2020

TDP-43 α-helical structure tunes liquid-liquid phase separation and function.

Alexander E Conicella, Gregory L Dignon, Gül H Zerze, Hermann Broder Schmidt, Alexandra M D'Ordine, Young C Kim, Rajat Rohatgi, Yuna M Ayala, Jeetain Mittal, Nicolas L Fawzi

Open access · hybridAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 238 papers.

0numbers the graph read from it
0cells of the map it votes in
238citing papers in PubMed
21.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

238 citing papers in PubMed, 391 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Fusion protein condensate formation via coiled-coil domains.Protein science : a publication of the Protein Society · 2026
    Article
  8. Article
  9. TDP-43 Aggregation: The Healthy-Toxic Balance of the Prion-Like Domain.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Review
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

178 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 2 countries.

Alexander E ConicellaDepartment of Molecular Pharmacology, Physiology, and Biotechnology, Brown University, Providence, RI 02912.
Gregory L DignonDepartment of Chemical and Biomolecular Engineering, Lehigh University, Bethlehem, PA 18015.
Gül H ZerzeDepartment of Chemical and Biomolecular Engineering, Lehigh University, Bethlehem, PA 18015.
Hermann Broder SchmidtDepartment of Biochemistry, Stanford University School of Medicine, Stanford, CA 94305.
Alexandra M D'OrdineGraduate Program in Molecular Biology, Cell Biology, and Biochemistry, Brown University, Providence, RI 02912.
Young C KimCenter for Materials Physics and Technology, Naval Research Laboratory, Washington, DC 20375.
Rajat RohatgiDepartment of Biochemistry, Stanford University School of Medicine, Stanford, CA 94305.ORCID 0000-0001-7609-8858
Yuna M AyalaEdward Doisy Department of Biochemistry and Molecular Biology, Saint Louis University School of Medicine, St. Louis, MO 63103.
Jeetain MittalDepartment of Chemical and Biomolecular Engineering, Lehigh University, Bethlehem, PA 18015; jeetain@lehigh.edu nicolas_fawzi@brown.edu.
Nicolas L FawziDepartment of Molecular Pharmacology, Physiology, and Biotechnology, Brown University, Providence, RI 02912; jeetain@lehigh.edu nicolas_fawzi@brown.edu.ORCID 0000-0001-5483-0577
Lehigh University · USBrown University · USStanford University · USSaint Louis University · USUnited States Naval Research Laboratory · USUniversity of Toronto · CA

Funding

Supplement application for an Olympus automated microscopeR35GM118082 · NIGMS · STANFORD UNIVERSITY · PI RAJAT ROHATGI · 2016 to 2026
$7.6M
TRAINING IN MOLECULAR &CELL BIOLOGY &BIOCHEMISTRYT32GM007601 · NIGMS · BROWN UNIVERSITY · PI MOWRY, KIMBERLY L. · 1985 to 2019
$6.4M
Reconstructing Primary CiliaDP2GM105448 · NIGMS · STANFORD UNIVERSITY · PI ROHATGI, RAJAT · 2012 to 2012
$2.4M
Turning off the molecular switch for pathological self-assembly of FUSR01GM118530 · NIGMS · BROWN UNIVERSITY · PI FAWZI, NICOLAS LUX · 2016 to 2020
$1.6M
NIGMS NIH HHS DP2 GM105448NIGMS NIH HHS R01 GM118530NIGMS NIH HHS R35 GM118082NIGMS NIH HHS T32 GM007601
6 · The paper itself

Abstract

Liquid-liquid phase separation (LLPS) is involved in the formation of membraneless organelles (MLOs) associated with RNA processing. The RNA-binding protein TDP-43 is present in several MLOs, undergoes LLPS, and has been linked to the pathogenesis of amyotrophic lateral sclerosis (ALS). While some ALS-associated mutations in TDP-43 disrupt self-interaction and function, here we show that designed single mutations can enhance TDP-43 assembly and function via modulating helical structure. Using molecular simulation and NMR spectroscopy, we observe large structural changes upon dimerization of TDP-43. Two conserved glycine residues (G335 and G338) are potent inhibitors of helical extension and helix-helix interaction, which are removed in part by variants at these positions, including the ALS-associated G335D. Substitution to helix-enhancing alanine at either of these positions dramatically enhances phase separation in vitro and decreases fluidity of phase-separated TDP-43 reporter compartments in cells. Furthermore, G335A increases TDP-43 splicing function in a minigene assay. Therefore, the TDP-43 helical region serves as a short but uniquely tunable module where application of biophysical principles can precisely control assembly and function in cellular and synthetic biology applications of LLPS.

Indexed as

Protein Conformation, alpha-HelicalAmyotrophic Lateral SclerosisDNA-Binding ProteinsEscherichia coliHumansMagnetic Resonance SpectroscopyMolecular Docking SimulationMutationProtein ConformationProtein DomainsProtein Interaction Domains and MotifsProtein SplicingRNA-Binding ProteinsDNA-Binding ProteinsRNA-Binding ProteinsTARDBP protein, humanliquid–liquid phase separationmolecular simulationNMR spectroscopyprotein interactions

Identifiers

PMID32132204
PMCPMC7084079
OpenAlexW3009501790

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.