Evidence map›Paper›PMID 32130234›Full record

ArticlePloS one2020

A survey of extended-spectrum beta-lactamase-producing Enterobacteriaceae in urban wetlands in southwestern Nigeria as a step towards generating prevalence maps of antimicrobial resistance.

Olawale Olufemi Adelowo, Odion Osebhahiemen Ikhimiukor, Camila Knecht, John Vollmers, Mudit Bhatia, Anne-Kirstin Kaster, Jochen A Müller

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed, 1 pooled it
1.3field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 1 synthesis or guideline pooled it, 33 citations in OpenAlex.

  1. Pooled it
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  13. Genomic Insights of Multidrug-ResistantFrontiers in veterinary science · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Olawale Olufemi AdelowoDepartment of Environmental Biotechnology, Helmholtz Centre for Environmental Research-UFZ, Leipzig, Germany.ORCID 0000-0002-5235-8122
Odion Osebhahiemen IkhimiukorDepartment of Environmental Biotechnology, Helmholtz Centre for Environmental Research-UFZ, Leipzig, Germany.
Camila KnechtDepartment of Environmental Biotechnology, Helmholtz Centre for Environmental Research-UFZ, Leipzig, Germany.
John VollmersInstitute for Biological Interfaces (IBG5), Karlsruhe Institute of Technology, Eggenstein-Leopoldshafen, Germany.ORCID 0000-0001-5980-5178
Mudit BhatiaDepartment of Environmental Biotechnology, Helmholtz Centre for Environmental Research-UFZ, Leipzig, Germany.
Anne-Kirstin KasterInstitute for Biological Interfaces (IBG5), Karlsruhe Institute of Technology, Eggenstein-Leopoldshafen, Germany.
Jochen A MüllerDepartment of Environmental Biotechnology, Helmholtz Centre for Environmental Research-UFZ, Leipzig, Germany.ORCID 0000-0002-0935-1523
Helmholtz Centre for Environmental Research · DEKarlsruhe Institute of Technology · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In many countries, emission of insufficiently treated wastewater into water bodies appears to be an important factor in spreading clinically relevant antimicrobial resistant bacteria. In this study, we looked for the presence of Enterobacteriaceae strains with resistance to 3rd generation cephalosporin antibiotics in four urban wetlands in southwestern Nigeria by isolation, whole genome sequencing and qPCR enumeration of marker genes. Genome analysis of multi-drug resistant and potentially pathogenic Escherichia coli isolates (members of the widely distributed ST10 complex) revealed the presence of the extended spectrum beta-lactamase gene blaCTX-M-15 on self-transmissible IncF plasmids. The gene was also present together with a blaTEM-1B gene on self-transmissible IncH plasmids in multi-drug resistant Enterobacter cloacae isolates. A Citrobacter freundii isolate carried blaTEM-1B on an IncR-type plasmid without discernable conjugation apparatus. All strains were isolated from a wetland for which previous qPCR enumeration of marker genes, in particular the ratio of intI1 to 16S rRNA gene copy numbers, had indicated a strong anthropogenic impact. Consistent with the isolation origin, qPCR analysis in this study showed that the blaCTX-M gene was present at an abundance of 1x10-4 relative to bacterial 16S rRNA gene copy numbers. The results indicate that contamination of these urban aquatic ecosystems with clinically relevant antibiotic resistant bacteria is substantial in some areas. Measures should therefore be put in place to mitigate the propagation of clinically relevant antimicrobial resistance within the Nigerian aquatic ecosystems.

Indexed as

CitiesDrug Resistance, BacterialSurveys and QuestionnairesWetlandsAnti-Bacterial Agentsbeta-LactamasesCephalosporinsEnterobacteriaceaeGenes, BacterialMicrobial Sensitivity TestsNigeriaPrevalenceAnti-Bacterial Agentsbeta-LactamasesCephalosporins

Identifiers

PMID32130234
PMCPMC7055906
OpenAlexW3009847852

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.