Evidence map›Paper›PMID 32130207›Full record

ArticlePLoS computational biology2020

Striated myocyte structural integrity: Automated analysis of sarcomeric z-discs.

Tessa Altair Morris, Jasmine Naik, Kirby Sinclair Fibben, Xiangduo Kong, Tohru Kiyono, Kyoko Yokomori, Anna Grosberg

Open access · goldAbstract read
In one paragraph

Article in PLoS computational biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 71 citations in OpenAlex.

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  5. In vitro sex-specific function-structure relationship in neonatal rat cardiac monolayers.Proceedings of the National Academy of Sciences of the United States of America · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Tessa Altair MorrisCenter for Complex Biological Systems, University of California, Irvine, Irvine, California, United States of America.ORCID 0000-0002-7649-4364
Jasmine NaikEdwards Lifesciences Center for Advanced Cardiovascular Technology, University of California, Irvine, Irvine, California, United States of America.ORCID 0000-0003-1228-180X
Kirby Sinclair FibbenDepartment of Biomedical Engineering, University of California, Irvine, Irvine, California, United States of America.
Xiangduo KongDepartment of Biological Chemistry, School of Medicine, University of California, Irvine, Irvine, California, United States of America.
Tohru KiyonoDivision of Carcinogenesis and Cancer Prevention, National Cancer Center Research Institute, Tsukiji, Chuo-ku, Tokyo, Japan.ORCID 0000-0003-1769-403X
Kyoko YokomoriDepartment of Biological Chemistry, School of Medicine, University of California, Irvine, Irvine, California, United States of America.
Anna GrosbergCenter for Complex Biological Systems, University of California, Irvine, Irvine, California, United States of America.ORCID 0000-0002-8878-0843
University of California, Irvine · US

Funding

Genetic and epigenetic mechanisms of FSHD pathogenesisR01AR071287 · NIAMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI Seyed Ali Mortazavi, Kyoko Yokomori · 2017 to 2026
$4.6M
Cardiac Functional and Structural Implications of Lamin A/C MutationsR01HL129008 · NHLBI · UNIVERSITY OF CALIFORNIA-IRVINE · PI GROSBERG, ANNA, ZARAGOZA, MICHAEL V · 2015 to 2019
$2.1M
Training Program in Cardiovascular Applied Research and EntrepreneurshipT32HL116270 · NHLBI · UNIVERSITY OF CALIFORNIA-IRVINE · PI HUGHES, CHRISTOPHER C. W. · 2013 to 2022
$1.6M
Analysis of D4Z4 heterochromatin in FSHD myoblast modelsR21AR067636 · NIAMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI YOKOMORI, KYOKO · 2015 to 2016
$374k
NHLBI NIH HHS R01 HL129008NHLBI NIH HHS T32 HL116270NIAMS NIH HHS R01 AR071287NIAMS NIH HHS R21 AR067636
6 · The paper itself

Abstract

As sarcomeres produce the force necessary for contraction, assessment of sarcomere order is paramount in evaluation of cardiac and skeletal myocytes. The uniaxial force produced by sarcomeres is ideally perpendicular to their z-lines, which couple parallel myofibrils and give cardiac and skeletal myocytes their distinct striated appearance. Accordingly, sarcomere structure is often evaluated by staining for z-line proteins such as α-actinin. However, due to limitations of current analysis methods, which require manual or semi-manual handling of images, the mechanism by which sarcomere and by extension z-line architecture can impact contraction and which characteristics of z-line architecture should be used to assess striated myocytes has not been fully explored. Challenges such as isolating z-lines from regions of off-target staining that occur along immature stress fibers and cell boundaries and choosing metrics to summarize overall z-line architecture have gone largely unaddressed in previous work. While an expert can qualitatively appraise tissues, these challenges leave researchers without robust, repeatable tools to assess z-line architecture across different labs and experiments. Additionally, the criteria used by experts to evaluate sarcomeric architecture have not been well-defined. We address these challenges by providing metrics that summarize different aspects of z-line architecture that correspond to expert tissue quality assessment and demonstrate their efficacy through an examination of engineered tissues and single cells. In doing so, we have elucidated a mechanism by which highly elongated cardiomyocytes become inefficient at producing force. Unlike previous manual or semi-manual methods, characterization of z-line architecture using the metrics discussed and implemented in this work can quantitatively evaluate engineered tissues and contribute to a robust understanding of the development and mechanics of striated muscles.

Indexed as

Muscle Fibers, SkeletalMyocytes, CardiacSarcomeresAlgorithmsAnimalsCells, CulturedHumansImage Processing, Computer-AssistedMicroscopy, FluorescenceMuscle, SkeletalMyofibrilsRatsRats, Sprague-Dawley

Identifiers

PMID32130207
PMCPMC7075639
OpenAlexW3010337032

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.