Evidence map›Paper›PMID 32129990›Full record

ArticleJournal of the American Chemical Society2020

Detection of Transport Intermediates in the Peptidoglycan Flippase MurJ Identifies Residues Essential for Conformational Cycling.

Frederick A Rubino, Aurelio Mollo, Sujeet Kumar, Emily K Butler, Natividad Ruiz, Suzanne Walker, Daniel E Kahne

Abstract read
In one paragraph

Article in Journal of the American Chemical Society, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. YdbH and YnbE form an intermembrane bridge to maintain lipid homeostasis in the outer membrane ofProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Lipid Transport Across Bacterial Membranes.Annual review of cell and developmental biology · 2022
    Review
  11. Structure and Mechanism of the Lipid Flippase MurJ.Annual review of biochemistry · 2022
    Review
  12. Review
  13. Review
  14. Inhibition ofMicrobiology (Reading, England) · 2022
    Article
  15. Article
  16. Review
  17. Review
  18. Lipopolysaccharide O-antigens-bacterial glycans made to measure.The Journal of biological chemistry · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Frederick A RubinoDepartment of Chemistry and Chemical Biology, Harvard University, Cambridge, Massachusetts 02138, United States.ORCID 0000-0002-7149-6088
Aurelio MolloDepartment of Chemistry and Chemical Biology, Harvard University, Cambridge, Massachusetts 02138, United States.ORCID 0000-0001-9111-6911
Sujeet KumarDepartment of Microbiology, Ohio State University, Columbus, Ohio 43210, United States.ORCID 0000-0002-8207-4358
Emily K ButlerDepartment of Microbiology, Ohio State University, Columbus, Ohio 43210, United States.ORCID 0000-0003-2906-0595
Natividad RuizDepartment of Microbiology, Ohio State University, Columbus, Ohio 43210, United States.ORCID 0000-0002-6369-2206
Suzanne WalkerDepartment of Microbiology, Harvard Medical School, Boston, Massachusetts 02115, United States.ORCID 0000-0002-0545-914X
Daniel E KahneDepartment of Chemistry and Chemical Biology, Harvard University, Cambridge, Massachusetts 02138, United States.ORCID 0000-0002-8296-1424

Funding

Mechanism and Inhibition of Enzymes that Assemble Bacterial Cell WallR01GM076710 · NIGMS · HARVARD MEDICAL SCHOOL · PI WALKER, SUZANNE · 2007 to 2019
$5.9M
Discovery and characterization of new bacterial cell wall targets and inhibitors to treat resistant infectionsR01AI148752 · NIAID · HARVARD MEDICAL SCHOOL · PI Daniel Kahne, Suzanne Walker · 2020 to 2026
$5.5M
Envelope Biogenesis in Gram-negative BacteriaR01GM100951 · NIGMS · OHIO STATE UNIVERSITY · PI RUIZ, NATIVIDAD · 2012 to 2023
$3.7M
NIAID NIH HHS R01 AI148752NIGMS NIH HHS R01 GM076710NIGMS NIH HHS R01 GM100951
6 · The paper itself

Abstract

Bacterial cell wall synthesis is an essential process in bacteria and one of the best targets for antibiotics. A critical step on this pathway is the export of the lipid-linked cell wall monomer, Lipid II, by its transporter MurJ. The mechanism by which MurJ mediates the transbilayer movement of Lipid II is not understood because intermediate states of this process have not been observed. Here we demonstrate a method to capture and detect interactions between MurJ and its substrate Lipid II by photo-cross-linking and subsequent biotin-tagging. We show that this method can be used to covalently capture intermediate transport states of Lipid II on MurJ in living cells. Using this strategy we probed several lethal arginine mutants and found that they retain appreciable substrate-binding ability despite being defective in Lipid II transport. We propose that Lipid II binding to these residues during transport induces a conformational change in MurJ required to proceed through the Lipid II transport cycle. The methods described to detect intermediate transport states of MurJ will be useful for characterizing mechanisms of inhibitors.

Indexed as

ArginineEscherichia coliEscherichia coli ProteinsMutationPhospholipid Transfer ProteinsProtein BindingProtein ConformationUridine Diphosphate N-Acetylmuramic AcidArginineEscherichia coli Proteinsmuramyl-NAc-(pentapeptide)pyrophosphoryl-undecaprenolMurJ protein, E coliPhospholipid Transfer ProteinsUridine Diphosphate N-Acetylmuramic Acid

Identifiers

PMID32129990
PMCPMC7192318

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.