Evidence map›Paper›PMID 32129880›Full record

ArticleInternational journal of cancer2020

ONECUT2 upregulation is associated with CpG hypomethylation at promoter-proximal DNA in gastric cancer and triggers ACSL5.

Eun-Hye Seo, Hee-Jin Kim, Jong-Hwan Kim, Byungho Lim, Jong-Lyul Park, Seon-Young Kim, Sang-Il Lee, Hyun-Yong Jeong, Kyu-Sang Song, Yong-Sung Kim

Open access · hybridAbstract read
In one paragraph

Article in International journal of cancer, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 37 citations in OpenAlex.

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  14. Biomedicines · 2022
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  20. Cancer management and research · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Eun-Hye SeoGenome Editing Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon, Republic of Korea.
Hee-Jin KimGenome Editing Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon, Republic of Korea.
Jong-Hwan KimPersonalized Genomic Medicine Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon, Republic of Korea.
Byungho LimDivision of Drug Discovery Research, Research Center for Drug Discovery Technology, Korea Research Institute of Chemical Technology, Daejeon, Republic of Korea.
Jong-Lyul ParkGenome Editing Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon, Republic of Korea.
Seon-Young KimDepartment of Functional Genomics, Korea University of Science and Technology, Daejeon, Republic of Korea.
Sang-Il LeeDepartment of Surgery, College of Medicine, Chungnam National University, Daejeon, Republic of Korea.
Hyun-Yong JeongDepartment of Internal Medicine, College of Medicine, Chungnam National University, Daejeon, Republic of Korea.
Kyu-Sang SongDepartment of Pathology, College of Medicine, Chungnam National University, Daejeon, Republic of Korea.
Yong-Sung KimGenome Editing Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon, Republic of Korea.ORCID 0000-0001-7113-272X
Korea Research Institute of Bioscience and Biotechnology · KRChungnam National University · KRDrug Discovery Laboratory (Norway) · NO

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Many studies have focused on global hypomethylation or hypermethylation of tumor suppressor genes, but less is known about the impact of promoter hypomethylation of oncogenes. We previously showed that promoter methylation may gradually increase or decrease during the transition from gastric mucosa (GM) to intestinal metaplasia (IM) to gastric cancer (GC). In our study, we focused on regional CpG hypomethylation of the promoter-proximal DNA of the transcription factor ONECUT2 (OC2) in IM and GC cells. We validated the hypomethylation of promoter-proximal DNA of OC2 in 160 primary GCs, in which methylation level correlated negatively with OC2 mRNA level. IM and GC cells stained positively for OC2, whereas GM cells did not. Stable transfection of OC2 in GC cells promoted colony formation, cell migration, invasion and proliferation. Moreover, OC2 knockdown with a short hairpin RNA suppressed tumorigenesis in nude mice. In addition, chromatin immunoprecipitation coupled with DNA sequencing and RNA-seq analyses revealed that OC2 triggered ACSL5, which is strongly expressed in IM of the stomach but not in GM, indicating that OC2 and ACSL5 are early-stage biomarkers for GC. We also observed a high correlation between the levels of OC2 and ACSL5 mRNAs in the GENT database These results suggest that epigenetic alteration of OC2 upregulates its expression, which then activates ACSL5; thus, OC2 is induced in IM by epigenetic alteration and triggers ACSL5 expression, and thus OC2 and ACSL5 may cooperatively promote intestinal differentiation and GC progression.

Indexed as

DNA MethylationAnimalsBiomarkers, TumorCarcinogenesisCell DifferentiationCell Line, TumorCoenzyme A LigasesCpG IslandsEpigenesis, GeneticGastric MucosaGene Expression Regulation, NeoplasticGene Knockdown TechniquesHomeodomain ProteinsHumansMiceNeoplasm StagingACSL5 protein, humanBiomarkers, TumorCoenzyme A LigasesHomeodomain ProteinsONECUT2 protein, humanTranscription FactorsACSL5DNA hypomethylationgastric cancerintestinal metaplasiaONECUT2

Identifiers

PMID32129880
PMCPMC7217064
OpenAlexW3010103014

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.