Evidence map›Paper›PMID 32128853›Full record

ArticleThe EMBO journal2020

A SNARE geranylgeranyltransferase essential for the organization of the Golgi apparatus.

Ryutaro Shirakawa, Sakurako Goto-Ito, Kota Goto, Shonosuke Wakayama, Haremaru Kubo, Natsumi Sakata, Duc Anh Trinh, Atsushi Yamagata, Yusuke Sato, Hiroshi Masumoto and 4 more

Open access · greenAbstract read
In one paragraph

Article in The EMBO journal, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 57 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
57citing papers in PubMed, 1 pooled it
4.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

57 citing papers in PubMed, 1 synthesis or guideline pooled it, 76 citations in OpenAlex.

  1. Pooled it
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  11. Review
  12. ACS chemical biology · 2025
    Article
  13. Review
  14. Article
  15. Article
  16. Novel Roles for Geranylgeranyl Transferase-III (GGTase-III) in Insulin Secretion.Cellular physiology and biochemistry : international journal of experimental cellular physiology, biochemistry, and pharmacology · 2025
    Article
  17. Review
  18. Genetic Analysis of Choroideremia-Related Rab Escort Proteins.International journal of molecular sciences · 2025
    Article
  19. Examining Farnesyltransferase Interaction With Cell-Permeable CaaX Peptides and the Role of the CaaX Motif in Biological Activity.Journal of peptide science : an official publication of the European Peptide Society · 2025
    Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 1 country.

Ryutaro Shirakawa *Department of Molecular and Cellular Biology, Institute of Development, Aging and Cancer, Tohoku University, Sendai, Japan.ORCID 0000-0002-2561-9796
Sakurako Goto-Ito *Institute for Quantitative Biosciences, The University of Tokyo, Tokyo, Japan.
Kota GotoDepartment of Molecular and Cellular Biology, Institute of Development, Aging and Cancer, Tohoku University, Sendai, Japan.
Shonosuke WakayamaDepartment of Molecular and Cellular Biology, Institute of Development, Aging and Cancer, Tohoku University, Sendai, Japan.
Haremaru KuboDepartment of Molecular and Cellular Biology, Institute of Development, Aging and Cancer, Tohoku University, Sendai, Japan.
Natsumi SakataDepartment of Molecular and Cellular Biology, Institute of Development, Aging and Cancer, Tohoku University, Sendai, Japan.
Duc Anh TrinhDepartment of Molecular and Cellular Biology, Institute of Development, Aging and Cancer, Tohoku University, Sendai, Japan.
Atsushi YamagataInstitute for Quantitative Biosciences, The University of Tokyo, Tokyo, Japan.
Yusuke SatoInstitute for Quantitative Biosciences, The University of Tokyo, Tokyo, Japan.
Hiroshi MasumotoBiomedical Research Support Center, Nagasaki University School of Medicine, Nagasaki, Japan.
Jinglei ChengDepartment of Anatomy and Molecular Cell Biology, Nagoya University Graduate School of Medicine, Nagoya, Japan.
Toyoshi FujimotoResearch Institute for Diseases of Old Age, Juntendo University Graduate School of Medicine, Tokyo, Japan.
Shuya FukaiInstitute for Quantitative Biosciences, The University of Tokyo, Tokyo, Japan.ORCID 0000-0002-1241-1443
Hisanori HoriuchiDepartment of Molecular and Cellular Biology, Institute of Development, Aging and Cancer, Tohoku University, Sendai, Japan.
Tohoku University · JPJapan Synchrotron Radiation Research Institute · JPJuntendo University · JPNagasaki University · JPNagoya University · JP

Funding

MEXT | Japan Society for the Promotion of Science (JSPS) 16H05148MEXT | Japan Society for the Promotion of Science (JSPS) 16K08574MEXT | Japan Society for the Promotion of Science (JSPS) 17K15072MEXT | JST | Core Research for Evolutional Science and Technology (CREST) JPMJCR12M5Takeda Science Foundation
6 · The paper itself

Abstract

Protein prenylation is essential for many cellular processes including signal transduction, cytoskeletal reorganization, and membrane trafficking. Here, we identify a novel type of protein prenyltransferase, which we named geranylgeranyltransferase type-III (GGTase-III). GGTase-III consists of prenyltransferase alpha subunit repeat containing 1 (PTAR1) and the β subunit of RabGGTase. Using a biotinylated geranylgeranyl analogue, we identified the Golgi SNARE protein Ykt6 as a substrate of GGTase-III. GGTase-III transfers a geranylgeranyl group to mono-farnesylated Ykt6, generating doubly prenylated Ykt6. The crystal structure of GGTase-III in complex with Ykt6 provides structural basis for Ykt6 double prenylation. In GGTase-III-deficient cells, Ykt6 remained in a singly prenylated form, and the Golgi SNARE complex assembly was severely impaired. Consequently, the Golgi apparatus was structurally disorganized, and intra-Golgi protein trafficking was delayed. Our findings reveal a fourth type of protein prenyltransferase that generates geranylgeranyl-farnesyl Ykt6. Double prenylation of Ykt6 is essential for the structural and functional organization of the Golgi apparatus.

Indexed as

Alkyl and Aryl TransferasesAnimalsDimethylallyltranstransferaseGolgi ApparatusHumansMaleMembrane FusionProtein BindingProtein MultimerizationProtein PrenylationProtein TransportRatsRats, WistarR-SNARE ProteinsSNARE ProteinsAlkyl and Aryl TransferasesDimethylallyltranstransferasePTAR1 protein, humanRABGGTB protein, humanR-SNARE ProteinsSNARE ProteinsYKT6 protein, humanGolgiprotein prenylationPTAR1SNAREYkt6

Identifiers

PMID32128853
PMCPMC7156963
OpenAlexW3010233577

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.