Evidence map›Paper›PMID 32128389›Full record

ArticleScience advances2020

LATS kinase-mediated CTCF phosphorylation and selective loss of genomic binding.

Huacheng Luo, Qin Yu, Yang Liu, Ming Tang, Mingwei Liang, Dingpeng Zhang, Tsan Sam Xiao, Lizi Wu, Ming Tan, Yijun Ruan and 2 more

Open access · goldAbstract read
In one paragraph

Article in Science advances, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.6field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 38 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
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  7. YAP/TAZ Signalling Controls Epidermal Keratinocyte Fate.International journal of molecular sciences · 2024
    Review
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  11. Article
  12. 3D genome alterations and editing in pathology.Molecular therapy : the journal of the American Society of Gene Therapy · 2023
    Review
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. CTCF: A misguided jack-of-all-trades in cancer cells.Computational and structural biotechnology journal · 2022
    Review
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Huacheng LuoDepartment of Biochemistry and Molecular Biology, UF Health Cancer Center, College of Medicine, University of Florida, Gainesville, FL 32610, USA.ORCID 0000-0002-5844-8890
Qin YuDepartment of Biochemistry and Molecular Biology, UF Health Cancer Center, College of Medicine, University of Florida, Gainesville, FL 32610, USA.ORCID 0000-0003-0965-9461
Yang LiuDepartment of Biochemistry and Molecular Biology, UF Health Cancer Center, College of Medicine, University of Florida, Gainesville, FL 32610, USA.ORCID 0000-0002-5721-5702
Ming TangDepartment of Biochemistry and Molecular Biology, UF Health Cancer Center, College of Medicine, University of Florida, Gainesville, FL 32610, USA.
Mingwei LiangDepartment of Biochemistry and Molecular Biology, UF Health Cancer Center, College of Medicine, University of Florida, Gainesville, FL 32610, USA.ORCID 0000-0002-5206-1353
Dingpeng ZhangDepartment of Biochemistry and Molecular Biology, UF Health Cancer Center, College of Medicine, University of Florida, Gainesville, FL 32610, USA.ORCID 0000-0002-9964-9015
Tsan Sam XiaoDepartment of Pathology, Case Western Reserve University, Cleveland, OH 44106, USA.ORCID 0000-0001-9688-475X
Lizi WuDepartment of Molecular Genetics and Microbiology, UF Health Cancer Center, College of Medicine, University of Florida, Gainesville, FL 32610, USA.
Ming TanCenter for Cell Death and Metabolism, Mitchell Cancer Institute, University of South Alabama, Mobile, AL 36688, USA.
Yijun RuanThe Jackson Laboratory for Genomic Medicine, Farmington, CT 06030, USA.ORCID 0000-0001-5881-569X
Jörg BungertDepartment of Biochemistry and Molecular Biology, UF Health Cancer Center, College of Medicine, University of Florida, Gainesville, FL 32610, USA.
Jianrong LuDepartment of Biochemistry and Molecular Biology, UF Health Cancer Center, College of Medicine, University of Florida, Gainesville, FL 32610, USA.ORCID 0000-0002-4969-6040
University of Florida Health · USCase Western Reserve University · USJackson Laboratory · USUSA Mitchell Cancer Institute · US

Funding

Developing chemical probes that target specific inflammasomesR21AR069908 · NIAMS · CASE WESTERN RESERVE UNIVERSITY · PI XIAO, TSAN SAM · 2016 to 2017
$384k
NIAMS NIH HHS R21 AR069908
6 · The paper itself

Abstract

Chromatin topological organization is instrumental in gene transcription. Gene-enhancer interactions are accommodated in the same CTCF-mediated insulated neighborhoods. However, it remains poorly understood whether and how the 3D genome architecture is dynamically restructured by external signals. Here, we report that LATS kinases phosphorylated CTCF in the zinc finger (ZF) linkers and disabled its DNA-binding activity. Cellular stress induced LATS nuclear translocation and CTCF ZF linker phosphorylation, and altered the landscape of CTCF genomic binding partly by dissociating it selectively from a small subset of its genomic binding sites. These sites were highly enriched for the boundaries of chromatin domains containing LATS signaling target genes. The stress-induced CTCF phosphorylation and locus-specific dissociation from DNA were LATS-dependent. Loss of CTCF binding disrupted local chromatin domains and down-regulated genes located within them. The study suggests that external signals may rapidly modulate the 3D genome by affecting CTCF genomic binding through ZF linker phosphorylation.

Indexed as

Binding SitesCCCTC-Binding FactorChromatinGenomicsHumansLipoproteinsModels, BiologicalPhosphorylationProtein BindingProtein KinasesSignal TransductionStress, PhysiologicalZinc FingersCCCTC-Binding FactorChromatinLipoproteinsProtein Kinases

Identifiers

PMID32128389
PMCPMC7030924
OpenAlexW3006800679

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.