Evidence map›Paper›PMID 32127902›Full record

ArticleAfrican health sciences2019

Immunoglobulin heavy variable (IgHV) gene mutation and micro-RNA expression in Burkitt's lymphoma at Moi Teaching and Referral Hospital in Western Kenya.

Isaac Ndede, S K Mining, K Patel, F M Wanjala, C Tenge

Open access · hybridAbstract readCase Reports
In one paragraph

Article in African health sciences, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.5field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 2 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Isaac NdedeDepartment of Immunology, Moi University School of Medicine, Eldoret, Kenya.
S K MiningDepartment of Immunology, Moi University School of Medicine, Eldoret, Kenya.
K PatelDepartment of Immunology, Moi University School of Medicine, Eldoret, Kenya.
F M WanjalaDepartment of Biological Sciences, University of Eldoret, Eldoret, Kenya.
C TengeDepartment of Child Health and Paediatrics, Moi University School of Medicine, Eldoret, Kenya.
Moi University · KEUniversity of Eldoret · KE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

introductionBurkitt's lymphoma (BL) is a virus associated childhood B-cell cancer common in Eastern Africa. Continued survival of B-cells in germinal centres depend on expression of high affinity immunoglobulins (Ig) to complementary antigens by somatic hypermutation of Ig genes. Cellular microRNAs, non-coding RNAs have been reported to play role in cell cycle regulation. Both viral antigen dependent mutation and micro-RNA expression maybe involved in BL pathogenesis.

objectiveTo describe immunoglobulin heavy variable (IgHV) rearrangement and micro-RNA expressions in BL tumours.

methodsGenomic DNA were extracted and purified from BL tissue blocks at Moi Teaching and Referral Hospital, before amplification using IgHV consensus primers and sequencing. The sequences were then aligned with germline alleles in IMGT/V-QUEST® database. Total RNA extracted from tissue blocks and cell lines were used to determine relative expression of hsamiR-34a and hsa-miR-127.

resultsIn all tumours, allele alignment scores and number of mutations range were 89.2-93.2%, 15-24 respectively. The range of IgHV amino acid changes were higher in EBER-1+ (15-25) than EBER-1- (9-15). In MYC+ tumours, the relative expression were: hsa-miR-127(2.09);hsa-miR-34a (2.8) and MYC- hsa-miR-127 (1.2), hsa-miR-34a (1.0).

conclusionB-cell in BL contained somatic mutated IgHV gene and upregulated cellular microRNAs with possible pathogenetic role(s).

Indexed as

Gene Expression Regulation, NeoplasticMutationBurkitt LymphomaChildChild, PreschoolFemaleGenes, ImmunoglobulinHumansKenyaMaleMicroRNAsMicroRNAsBurkitt's lymphomaIgHVmicroRNAsomatic hypermutation

Identifiers

PMID32127902
PMCPMC7040314
OpenAlexW2999582063

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.