Evidence map›Paper›PMID 32127542›Full record

ArticleScientific data2020

Transcriptomic resources for evolutionary studies in flat periwinkles and related species.

João P Marques, Graciela Sotelo, Juan Galindo, Pragya Chaube, Diana Costa, Sandra Afonso, Marina Panova, Katja Nowick, Roger Butlin, Johan Hollander and 1 more

Abstract readDataset
In one paragraph

Article in Scientific data, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

João P MarquesCIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO Laboratório Associado, Universidade do Porto, Vairão, Portugal.ORCID http://orcid.org/0000-0001-9834-1361
Graciela SoteloCIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO Laboratório Associado, Universidade do Porto, Vairão, Portugal.
Juan GalindoDepartment of Biochemistry, Genetics and Immunology, University of Vigo, Vigo, Spain.
Pragya ChaubeDepartment of Animal and Plant Sciences, University of Sheffield, Sheffield, UK.
Diana CostaCIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO Laboratório Associado, Universidade do Porto, Vairão, Portugal.
Sandra AfonsoCIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO Laboratório Associado, Universidade do Porto, Vairão, Portugal.
Marina PanovaDepartment of Marine Sciences, Centre for Marine Evolutionary Biology, University of Gothenburg, Gothenburg, Sweden.
Katja NowickInstitut für Zoologie, Freie Universität Berlin, Berlin, Germany.
Roger ButlinDepartment of Animal and Plant Sciences, University of Sheffield, Sheffield, UK.ORCID http://orcid.org/0000-0003-4736-0954
Johan HollanderDepartment of Biology, Aquatic Ecology, Lund University, Lund, Sweden.
Rui FariaCIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO Laboratório Associado, Universidade do Porto, Vairão, Portugal. r.macieiradefaria@sheffield.ac.uk.

Funding

EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020) 706376Ministry of Education and Science | Fundação para a Ciência e a Tecnologia (Portuguese Science and Technology Foundation) PTDC/BIA-EVF/113805/2009Ministry of Education and Science | Fundação para a Ciência e a Tecnologia (Portuguese Science and Technology Foundation) SFRH/BPD/89313/2012Vetenskapsrådet (Swedish Research Council) 2015-05001Volkswagen Foundation (VolkswagenStiftung) 50500776
6 · The paper itself

Abstract

The flat periwinkles, Littorina fabalis and L. obtusata, comprise two sister gastropod species that have an enormous potential to elucidate the mechanisms involved in ecological speciation in the marine realm. However, the molecular resources currently available for these species are still scarce. In order to circumvent this limitation, we used RNA-seq data to characterize the transcriptome of four individuals from each species sampled in different locations across the Iberian Peninsula. Four de novo transcriptome assemblies were generated, as well as a pseudo-reference using the L. saxatilis reference transcriptome as backbone. After transcripts' annotation, variant calling resulted in the identification of 19,072 to 45,340 putatively species-diagnostic SNPs. The discriminatory power of a subset of these SNPs was validated by implementing an independent genotyping assay to characterize reference populations, resulting in an accurate classification of individuals into each species and in the identification of hybrids between the two. These data comprise valuable genomic resources for a wide range of evolutionary and conservation studies in flat periwinkles and related taxa.

Indexed as

Biological EvolutionGenetics, PopulationTranscriptomeAnimalsGastropodaGenomeGenotyping TechniquesPolymorphism, Single NucleotidePortugalRNA-SeqSpain

Identifiers

PMID32127542
PMCPMC7054417

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.