Evidence map›Paper›PMID 32126105›Full record

ArticlePloS one2020

Optimized criteria for locomotion-based healthspan evaluation in C. elegans using the WorMotel system.

Areta Jushaj, Matthew Churgin, Bowen Yao, Miguel De La Torre, Christopher Fang-Yen, Liesbet Temmerman

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.6field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Phenotypic Screening inPharmaceuticals (Basel, Switzerland) · 2020
    Review
  10. Drug target insights
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Areta JushajAnimal Physiology and Neurobiology, Department of Biology, KU Leuven, Leuven, Belgium.ORCID 0000-0002-7297-7756
Matthew ChurginDepartment of Bioengineering, University of Pennsylvania, Philadelphia, United States of America.ORCID 0000-0003-2299-0124
Bowen YaoDepartment of Bioengineering, University of Pennsylvania, Philadelphia, United States of America.ORCID 0000-0002-6165-0379
Miguel De La TorreDepartment of Bioengineering, University of Pennsylvania, Philadelphia, United States of America.
Christopher Fang-YenDepartment of Bioengineering, University of Pennsylvania, Philadelphia, United States of America.
Liesbet TemmermanAnimal Physiology and Neurobiology, Department of Biology, KU Leuven, Leuven, Belgium.
University of Pennsylvania · USKU Leuven · BE

Funding

Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Ann E. Rougvie · 2012 to 2026
$7.5M
NIH HHS P40 OD010440
6 · The paper itself

Abstract

Getting a grip on how we may age healthily is a central interest of biogerontological research. To this end, a number of academic teams developed platforms for life- and healthspan assessment in Caenorhabditis elegans. These are very appealing for medium- to high throughput screens, but a broader implementation is lacking due to many systems relying on custom scripts for data analysis that others struggle to adopt. Hence, user-friendly recommendations would help to translate raw data into interpretable results. The aim of this communication is to streamline the analysis of data obtained by the WorMotel, an economically and practically appealing screening platform, in order to facilitate the use of this system by interested researchers. We here detail recommendations for the stepwise conversion of raw image data into activity values and explain criteria for assessment of health in C. elegans based on locomotion. Our analysis protocol can easily be adopted by researchers, and all needed scripts and a tutorial are available in S1 and S2 Files.

Indexed as

AgingAnimalsAnimals, Genetically ModifiedCaenorhabditis elegansCaenorhabditis elegans ProteinsForkhead Transcription FactorsGene Knockout TechniquesHealthy AgingHumansLocomotionLongevityModels, AnimalModels, BiologicalReceptor, InsulinRNA InterferenceTime FactorsCaenorhabditis elegans Proteinsdaf-16 protein, C elegansDAF-2 protein, C elegansForkhead Transcription FactorsReceptor, Insulin

Identifiers

PMID32126105
PMCPMC7053758
OpenAlexW3010068520

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.